Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h15
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   0.25 
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   0.44 
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    26   0.76 
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   1.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   1.8  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    24   2.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   5.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   7.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    23   7.1  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    23   7.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    22   9.4  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    22   9.4  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    22   9.4  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    22   9.4  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    22   9.4  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 126 KIIRDNKNLLSLTSSVSSFHICY 58
           K+I  ++ LL +TSSVSSF  C+
Sbjct: 373 KVISIDEALLDITSSVSSFQDCF 395


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   MLIWCIGLRKFIIKDGLKDSKYGMKKQSWLRIV 101
           M+I C+G    I+ D ++ S + MKK   + +V
Sbjct: 120 MIIECVGWNGMIVSDKMRKSVFHMKKNDRIVLV 152


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 212 LFIKHYTQSSKYVHEYCTGNIQQTND 135
           ++IK Y   +KYV  Y  G  +QT +
Sbjct: 110 MYIKEYPPLTKYVSLYAEGTSEQTEE 135


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 71  NEETELVKDSKFLLSRIIFWGRHLFAVC 154
           +E   +V +S+ + +R+IFW + ++ +C
Sbjct: 49  SEFNYIVNESQNVSTRLIFWNKWIYILC 76


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 105 FCYHGLFFGVVICLLYVSCAIFMYVFG*LCVM 200
           FC  G F G     +     I+MY FG  C+M
Sbjct: 839 FCIFGWFKGGHQTSIVAVLRIWMYSFGIFCIM 870


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 105 FCYHGLFFGVVICLLYVSCAIFMYVFG*LCV 197
           FC++G    +  C +Y++   F+ + G +C+
Sbjct: 275 FCFYGYVLWLCWCTMYLTHHYFVDLVGGMCL 305


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2

Query: 233 FEFTKYTLFIKHYTQSSKYVHEYCTGNIQQTNDDPKK*SVITKIYYP 93
           F   KY + I+ Y     + H Y      +T+  P   +V+ ++Y P
Sbjct: 18  FVIGKYNVTIEKYIAEGGFSHVYLVQTNSKTDGSPIT-AVLKRMYSP 63


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +3

Query: 135  VICLLYVSCAIFMYV 179
            ++C +Y+S ++F Y+
Sbjct: 2007 IVCSVYISASLFWYI 2021


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 235 FLNLQSTLYL*NITHNHPNTYMNIAQETY 149
           F +L S   L +  HN P  +++++  TY
Sbjct: 428 FTDLPSNNELFSFIHNIPKEFLHLSDSTY 456


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 157 ETYSKQMTTPKN 122
           ETYS+Q++ PKN
Sbjct: 101 ETYSEQVSLPKN 112


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 86   ALFLHSIFAILEAVFNNELSQ 24
            +L L    AIL  +FNN L Q
Sbjct: 2669 SLILDQFNAILTTIFNNPLQQ 2689


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 44  FNNELSQANAPD 9
           FN +LS+ NAPD
Sbjct: 632 FNKQLSRRNAPD 643


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 105  FCYHGLFFGVVICLLYVSCAIFMYVFG*LCVM 200
            FC  G F G     +     I+MY FG  C++
Sbjct: 927  FCIFGWFKGGHQTSIVAVIRIWMYSFGIFCLI 958


>SPBC1711.09c |||SNARE associated Golgi protein
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 68 IFAILEAVFNNEL 30
          +FAIL AVF+N+L
Sbjct: 16 VFAILLAVFHNDL 28


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 224 TKYTLFIKHYTQSSKYVHEYCTG 156
           T Y   +KHY +S +   EY  G
Sbjct: 192 TNYWFSLKHYCRSVEICEEYFHG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,814
Number of Sequences: 5004
Number of extensions: 21830
Number of successful extensions: 52
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)