Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5h15
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 1.2
12_02_0412 - 18799217-18801061 26 3.7
11_06_0337 - 22454281-22456399,22458520-22459388 26 3.7
09_02_0447 + 9452850-9454121,9454299-9454325 26 4.9
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 26 4.9
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 26 4.9
06_03_0470 - 21113186-21114183,21114273-21115824 25 6.5
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 25 8.5
11_01_0758 + 6362500-6363233,6363709-6365500 25 8.5
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 25 8.5
03_02_0780 - 11131064-11131276,11131444-11131516,11134152-11134513 25 8.5
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 25 8.5
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 25 8.5
01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167... 25 8.5
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 25 8.5
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 12 WCIGLRKFIIKDGLKDSKYGMKKQSWLRIVNFCYHGLFFGVVICLLYVS 158
W F + G+ D ++ RI++FCY+ L + CLLY+S
Sbjct: 381 WSEMYNSFCLGKGINDDVENIR-----RILSFCYYHLPSHLKTCLLYIS 424
>12_02_0412 - 18799217-18801061
Length = 614
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 81 QSWLRIVNFCYHGLFFGVVICLLYVS 158
Q RI+ CY L V CLLY+S
Sbjct: 81 QGMRRILRICYSDLSLPVRTCLLYLS 106
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 90 LRIVNFCYHGLFFGVVICLLYVS 158
+RI+N CY L + CLLY+S
Sbjct: 429 VRIINHCYKNLPPDLKTCLLYLS 451
>09_02_0447 + 9452850-9454121,9454299-9454325
Length = 432
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 2 DADLVHWLEKVHY*RRPQG*QIWNEETE 85
D DL HW+E + + R G W + E
Sbjct: 247 DVDLPHWIEHITFVGRANGRIYWGIDNE 274
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 93 RIVNFCYHGLFFGVVICLLYVS 158
RI++F Y+ L + V CLLY+S
Sbjct: 160 RILSFSYYDLPYHVRTCLLYLS 181
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 103 IFVITDYFLGSSFVCCMFPVQYSCTYLDDCV*CFINKVYFV 225
I+V T +F+ +CC+ + Y LD ++ VY+V
Sbjct: 210 IYVPTWFFIVVVVICCLVQLNYLNKALDSFNTAVVSPVYYV 250
>06_03_0470 - 21113186-21114183,21114273-21115824
Length = 849
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 178 YLDDCV*CFINKVYFVNSKKK 240
YL+DC+ FI + +F+ +K K
Sbjct: 813 YLNDCLVTFIEREFFLQAKDK 833
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 93 RIVNFCYHGLFFGVVICLLYVS 158
RI+N+CY L + C LY+S
Sbjct: 183 RILNYCYSSLPADLKTCSLYLS 204
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 93 RIVNFCYHGLFFGVVICLLYVS 158
++VN CY+ L + CLLY S
Sbjct: 384 QVVNLCYNSLPHCLKTCLLYFS 405
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 47 RPQG*QIWNEETELVKDSKFLLSRI 121
RPQG Q WN + K++ ++S +
Sbjct: 223 RPQGGQGWNSPAHISKEATIMVSTV 247
>03_02_0780 - 11131064-11131276,11131444-11131516,11134152-11134513
Length = 215
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 230 EFTKYTLFIKHYTQSSKYVHEYCTGNIQQTN 138
E YTL HY S+ ++YC + N
Sbjct: 103 EAANYTLSFCHYASDSRMWYDYCFMRYKNAN 133
>03_02_0557 +
9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 150 TANK*RPQKIIRDNKNLLSLTSSVSSFHICY 58
T K RP+ I++D + LLS T + F + Y
Sbjct: 355 TETKYRPESILKDVRGLLS-TGLLEGFRVTY 384
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 100 TILNQLCFFIPYLLSLRPSLIMNFLKPMH 14
TI L F+ PY+LSL S N ++P++
Sbjct: 178 TIPRPLNFYKPYILSLNKSAEENRVEPIY 206
>01_03_0074 +
12215414-12215603,12216178-12216236,12216605-12216703,
12216820-12216946,12216989-12217252,12217382-12217503,
12217575-12217646
Length = 310
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 129 QKIIRDNKNLLSLTSSVSSFH 67
QK+ R+ N LSLT +++S+H
Sbjct: 49 QKMFREAFNQLSLTQNLNSYH 69
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 93 RIVNFCYHGLFFGVVICLLYVS 158
RI++ YH L + + C LY+S
Sbjct: 444 RIMSLSYHDLLYHLKACFLYLS 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,244,993
Number of Sequences: 37544
Number of extensions: 110827
Number of successful extensions: 340
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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