Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h15
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AC006774-4|AAF60617.2|  313|Caenorhabditis elegans Serpentine re...    27   2.3  
AC006774-3|AAW57825.1|  348|Caenorhabditis elegans Serpentine re...    27   2.3  
Z81116-5|CAB03298.1|  414|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AY204186-1|AAO39190.1|  421|Caenorhabditis elegans nuclear recep...    26   3.1  
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    25   5.4  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    25   5.4  
AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    25   5.4  
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U49829-6|AAA93387.1|  498|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF016668-8|AAZ91349.1|  296|Caenorhabditis elegans Serpentine re...    25   7.2  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    25   9.5  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    25   9.5  
AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical...    25   9.5  
AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical...    25   9.5  
AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H...    25   9.5  
AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H...    25   9.5  
AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 191 QSSKYVHEYCTGNIQQTNDDPKK*SVIT 108
           +S KY+H+ CT +    +DD KK S  T
Sbjct: 767 RSEKYLHQGCTTSYSSFDDDNKKLSAST 794


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 191 QSSKYVHEYCTGNIQQTNDDPKK*SVIT 108
           +S KY+H+ CT +    +DD KK S  T
Sbjct: 767 RSEKYLHQGCTTSYSSFDDDNKKLSAST 794


>AC006774-4|AAF60617.2|  313|Caenorhabditis elegans Serpentine
           receptor, class t protein42, isoform a protein.
          Length = 313

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 YHGLFFGVVICLLYVSCAIFM 173
           Y  L +GV+I +LY+ C + M
Sbjct: 15  YIDLLYGVIIMILYIPCLVVM 35


>AC006774-3|AAW57825.1|  348|Caenorhabditis elegans Serpentine
           receptor, class t protein42, isoform b protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 YHGLFFGVVICLLYVSCAIFM 173
           Y  L +GV+I +LY+ C + M
Sbjct: 42  YIDLLYGVIIMILYIPCLVVM 62


>Z81116-5|CAB03298.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.6 protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 93  RIVNFCYHGLFFGVVICLLYVSCAIF 170
           ++   C HGL FGV+ C    +CA F
Sbjct: 25  KVCGLCAHGLHFGVLACR---ACAAF 47


>AY204186-1|AAO39190.1|  421|Caenorhabditis elegans nuclear receptor
           NHR-102 protein.
          Length = 421

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 93  RIVNFCYHGLFFGVVICLLYVSCAIF 170
           ++   C HGL FGV+ C    +CA F
Sbjct: 32  KVCGLCAHGLHFGVLACR---ACAAF 54


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +3

Query: 15  CIGLRKFIIKDGLKDSKYGMKKQ-SWLRIVNFCYHGLFFG--VVICLLYVSCAIFMYVF- 182
           CIG   F I      +K+ +     ++ I++ C+  +FFG  VVIC ++      M V+ 
Sbjct: 183 CIGCT-FSIVIVASQTKFDLTAHMGYILIISMCF--MFFGLVVVICSMFFKIKFLMMVYA 239

Query: 183 --G*LCVMFY 206
             G L +M Y
Sbjct: 240 LGGALIMMLY 249


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +3

Query: 15  CIGLRKFIIKDGLKDSKYGMKKQ-SWLRIVNFCYHGLFFG--VVICLLYVSCAIFMYVF- 182
           CIG   F I      +K+ +     ++ I++ C+  +FFG  VVIC ++      M V+ 
Sbjct: 183 CIGCT-FSIVIVASQTKFDLTAHMGYILIISMCF--MFFGLVVVICSMFFKIKFLMMVYA 239

Query: 183 --G*LCVMFY 206
             G L +M Y
Sbjct: 240 LGGALIMMLY 249


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 121 NP**QKFTILN--QLCFFIPYLLSLRPSLIMNFL 26
           NP    F IL+   LCF IP+ +++   +I NF+
Sbjct: 123 NPKLDNFRILHILALCFSIPWFVAIMSWIIYNFI 156


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 121 NP**QKFTILN--QLCFFIPYLLSLRPSLIMNFL 26
           NP    F IL+   LCF IP+ +++   +I NF+
Sbjct: 120 NPKLDNFRILHILALCFSIPWFVAMMSWIIYNFI 153


>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 51  LKDSKYGMKKQSWLRIVNFCYHGLFFGVVICLLY 152
           + +S +  K   W    +F   GLFFGV   + Y
Sbjct: 117 IHESNFTKKYFGWYIAASFLIFGLFFGVWYAICY 150


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 166 YSCTYLDDCV*CFINKVYFVNSKK 237
           YS     DC+ CF  +  F NSKK
Sbjct: 348 YSNIEPGDCIVCFSKRSIFFNSKK 371


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 166 YSCTYLDDCV*CFINKVYFVNSKK 237
           YS     DC+ CF  +  F NSKK
Sbjct: 350 YSNIEPGDCIVCFSKRSIFFNSKK 373


>U49829-6|AAA93387.1|  498|Caenorhabditis elegans Hypothetical
           protein F27D9.2 protein.
          Length = 498

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 126 FGVVICLLYVSCAIFMYVFG 185
           FG+V+ +  VS AIF  VFG
Sbjct: 79  FGIVVAMYSVSQAIFSPVFG 98


>AF016668-8|AAZ91349.1|  296|Caenorhabditis elegans Serpentine
           receptor, class t protein41 protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 120 LFFGVVICLLYVSCAIFM 173
           L +GV+I LLYV C   M
Sbjct: 2   LMYGVIIMLLYVPCLTVM 19


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 57   DSKYGMKKQSWLRIVNFCYHGLFFGVVICLLYVSCAIFMYVF 182
            DS Y  +   WL I     +G F   V  LL  +C +F+  F
Sbjct: 4805 DSSYDYRYSCWLWIGVILTNGQFLYRVGYLLCSACGVFLSPF 4846


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 57   DSKYGMKKQSWLRIVNFCYHGLFFGVVICLLYVSCAIFMYVF 182
            DS Y  +   WL I     +G F   V  LL  +C +F+  F
Sbjct: 4797 DSSYDYRYSCWLWIGVILTNGQFLYRVGYLLCSACGVFLSPF 4838


>AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6b protein.
          Length = 655

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 99  VNFCYHGLFFGVVICLLYVSCAIF 170
           +NF    +F+ VV+CLL  +C +F
Sbjct: 395 LNFAPWLIFWSVVLCLLGRACNVF 418


>AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6a protein.
          Length = 681

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 99  VNFCYHGLFFGVVICLLYVSCAIF 170
           +NF    +F+ VV+CLL  +C +F
Sbjct: 421 LNFAPWLIFWSVVLCLLGRACNVF 444


>AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H
           exchanger isoform 8b protein.
          Length = 655

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 99  VNFCYHGLFFGVVICLLYVSCAIF 170
           +NF    +F+ VV+CLL  +C +F
Sbjct: 395 LNFAPWLIFWSVVLCLLGRACNVF 418


>AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H
           exchanger isoform 8a protein.
          Length = 681

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 99  VNFCYHGLFFGVVICLLYVSCAIF 170
           +NF    +F+ VV+CLL  +C +F
Sbjct: 421 LNFAPWLIFWSVVLCLLGRACNVF 444


>AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical
           protein ZC190.6 protein.
          Length = 547

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +2

Query: 86  LVKDSKFLLSRIIFWGRHLFAVCFLCNIH-----VRIWMIV 193
           L  + +F LS +  W RHL     L ++      + IW+++
Sbjct: 185 LTLNQRFQLSDVYTWSRHLIPAVLLASLSKFMCIITIWVLI 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,014,396
Number of Sequences: 27780
Number of extensions: 119841
Number of successful extensions: 347
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)