Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5h15
(240 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 0.69
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 0.69
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 1.2
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 21 2.1
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 21 2.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 2.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 2.1
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 21 2.8
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 2.8
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 20 3.7
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 20 4.9
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 20 4.9
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 19 6.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 8.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 8.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 8.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 19 8.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 19 8.5
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 0.69
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 128 WGRHLFAVCFLCNIHVRIWMIVCNV 202
+ R +F VCF+C ++ W+I ++
Sbjct: 407 YSRIVFPVCFVC-FNLMYWIIYLHI 430
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 0.69
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 128 WGRHLFAVCFLCNIHVRIWMIVCNV 202
+ R +F VCF+C ++ W+I ++
Sbjct: 407 YSRIVFPVCFVC-FNLMYWIIYLHI 430
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.8 bits (44), Expect = 1.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 128 WGRHLFAVCFLCNIHVRIWMI 190
+ R +F VCF+C ++ W+I
Sbjct: 345 YSRIVFPVCFVC-FNLMYWII 364
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 21.0 bits (42), Expect = 2.1
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 83 LFLHSIFAILEA-VFNNE 33
+F+HSIF IL +++NE
Sbjct: 8 MFIHSIFLILIIFIYSNE 25
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 21.0 bits (42), Expect = 2.1
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 83 LFLHSIFAILEA-VFNNE 33
+F+HSIF IL +++NE
Sbjct: 8 MFIHSIFLILIIFIYSNE 25
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 2.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 227 FTKYTLFIKHYTQ 189
+TKYTL ++ Y Q
Sbjct: 1080 YTKYTLVVQAYNQ 1092
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 2.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 227 FTKYTLFIKHYTQ 189
+TKYTL ++ Y Q
Sbjct: 1076 YTKYTLVVQAYNQ 1088
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 20.6 bits (41), Expect = 2.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 18 IGLRKFIIKDGLKDSKYGMKKQSWLRIVNF 107
IG+ +F+I L+D G K ++L ++F
Sbjct: 98 IGMGEFLIDPSLEDEFMGPKCAAFLFQLSF 127
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 20.6 bits (41), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 191 QSSKYVHEYCTGNIQQTNDDP 129
Q+ Y+ EY GN DDP
Sbjct: 411 QNFYYIEEYLPGNGVIIPDDP 431
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.2 bits (40), Expect = 3.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 85 LCFFIPYLLSLRPSLIM 35
LC+ + + L LRP+ I+
Sbjct: 704 LCYLVTFALVLRPTDIV 720
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 19.8 bits (39), Expect = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 123 IIRDNKNLLSLTSSVSS 73
I +DNK+ LSL S +S+
Sbjct: 104 IQKDNKSYLSLRSLLSA 120
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 19.8 bits (39), Expect = 4.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 120 LFFGVVICLLYVSCAI 167
L++GV ICL+ + A+
Sbjct: 277 LYYGVSICLVTFASAL 292
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 19.4 bits (38), Expect = 6.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2
Query: 50 PQG*QIWNEE 79
P G QIWN++
Sbjct: 53 PNGMQIWNDK 62
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.0 bits (37), Expect = 8.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 127 LGSSFVCCMFPVQYS 171
LGS F C MF V S
Sbjct: 257 LGSYFNCIMFMVASS 271
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.0 bits (37), Expect = 8.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 127 LGSSFVCCMFPVQYS 171
LGS F C MF V S
Sbjct: 257 LGSYFNCIMFMVASS 271
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.0 bits (37), Expect = 8.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 127 LGSSFVCCMFPVQYS 171
LGS F C MF V S
Sbjct: 257 LGSYFNCIMFMVASS 271
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 8.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 127 LGSSFVCCMFPVQYS 171
LGS F C MF V S
Sbjct: 325 LGSYFNCIMFMVASS 339
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 19.0 bits (37), Expect = 8.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +2
Query: 101 KFLLSRIIFWGRHLFAVCFLCNIHVR 178
K+LL +I G + + N+H R
Sbjct: 300 KYLLFTMILVGLSVVITIVILNVHYR 325
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,893
Number of Sequences: 438
Number of extensions: 1459
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4024224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
- SilkBase 1999-2023 -