Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h14
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    30   0.37 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    30   0.37 
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   2.0  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   3.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.5  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   6.0  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    26   6.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.9  
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 245 SARARTPRSTDSEDATRSFPRLWYAN*ARFRHPLT 141
           S R++T   +      R FP  W+ N +  RHPLT
Sbjct: 28  SQRSKTSTRSSKPFLQRLFPSTWFKNESSSRHPLT 62


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +1

Query: 319  IIERETMCLPYCQYRCKCIEHKKLEKRERMCLPCCQQGYKRNTIQPISPLLVSNYTQTSH 498
            II   + C  + Q + +  EH++LE       PC  +    NT   ++ +L S Y   +H
Sbjct: 820  IIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQS-YISRAH 878

Query: 499  QEVTLNLLSETEHRARPVARM 561
             E    L S+T + A+   R+
Sbjct: 879  VE-DFTLTSDTNYVAQNAGRI 898


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 445 YYVCILVDSMVDTFSPSSLTSYVQYIY 365
           Y++C+L+DS+V+   P   T  VQY +
Sbjct: 868 YFICLLIDSLVEGLIPRGET--VQYAF 892


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 569 RAALNRSLSNENTYPLLVTQPKNGRKIPKIEGSNLCSYARLAP 697
           RA L    SN  T+PL +      +K  KIE S  C Y ++ P
Sbjct: 99  RAGLTND-SNRETFPLCI------KKYNKIENSIACKYIKIVP 134


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 185  RLWYAN*ARFRHPLTPPVSISTSLHLP 105
            RLW+     FR  L PPV+ ST   +P
Sbjct: 1013 RLWFGLLETFRDILVPPVTDSTLRRIP 1039


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 312 IFTILTSHLRESWSVL 265
           IF  L SHL ESWS++
Sbjct: 249 IFDYLLSHLPESWSII 264


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -3

Query: 187 RDFGTQIELDFATRSHHLFPYPLPSI-----SHPRI*KISSTLP 71
           RD   Q ++D   + H L P P PS+     S P +  I+S LP
Sbjct: 69  RDIEMQ-DVDAEAQPHDLLPIPQPSVEDFVDSKPHVKNITSVLP 111


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
 Frame = +1

Query: 295  CENSEYKKIIERETMCLPYCQYRCKCIEHKKLEKRERMCLPCCQQGYK--RNTIQPISPL 468
            C   E   +IE E +C  +   +C  +  KKL   E+   P C    +  R++ +P  PL
Sbjct: 1176 CRQPEAGMMIECE-LCHEWYHAKCMKMSKKKLRADEKFICPICDYRVEVPRHSHRP--PL 1232

Query: 469  -----LVSNYTQTSHQEVTLNLLSETEHRARPVA-RMRAQSCSKQISVKRKHVP 612
                 +V +      Q + + LL     +A     +M+++ C     +  K VP
Sbjct: 1233 IELQKMVDDIPTLPFQPIEIELLKRVVKQAEEFKNKMQSEVCD-PTQLSEKDVP 1285


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 361 RCKCIEHKKLEKRERMCLP 417
           RC C   +K E  ER C P
Sbjct: 25  RCTCFPKRKKEASERSCFP 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,802
Number of Sequences: 5004
Number of extensions: 65254
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)