Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5h14
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0021 - 13861369-13861538,13862274-13862432,13862493-138627... 31 0.67
08_01_0309 + 2633392-2633817 31 0.67
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 30 1.5
04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743 30 2.0
03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544 29 2.7
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 29 3.5
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 3.5
03_06_0713 - 35687672-35689219 29 3.5
03_05_0028 - 19988940-19989477,19989631-19989673,19990956-199910... 29 3.5
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 29 3.5
04_04_0748 + 27738155-27740290 29 4.7
01_01_1063 - 8386813-8387236,8387322-8387779 29 4.7
03_06_0504 - 34394442-34394729 28 6.2
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 28 6.2
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 28 8.2
07_01_0176 - 1244704-1245102 28 8.2
>09_04_0021 -
13861369-13861538,13862274-13862432,13862493-13862720,
13864057-13864246
Length = 248
Score = 31.5 bits (68), Expect = 0.67
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Frame = +1
Query: 136 GGVSGWRNRAQFAYQSRGKLRVASSESVLRGVRALADGHPSSVQDGPRLSQMRCENSEYK 315
GG + R R + +RG+ RVA + + G R V DG + C N E+K
Sbjct: 15 GGAAATRRRGRLC-AARGEARVAELTATMAGRRKARQRLGGMVSDGGGTNGRDCTNIEFK 73
Query: 316 KIIER--ETMCLPYCQYRCKCIEHKKLEKRERM 408
+ C R + ++ +E +E +
Sbjct: 74 GYVSYIFHIPLQHLCSNRSRLVKKNTIETKEEL 106
>08_01_0309 + 2633392-2633817
Length = 141
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 178 GTQIELDFATRSHHLFPYPLPSISHPRI 95
G I+LD + S+H FP+P PS+ PR+
Sbjct: 5 GVGIKLD-PSSSNHFFPFPFPSLPDPRL 31
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 254 GCPSARARTPRSTDSEDATR-SFPRLWY 174
GCP A A TP +++ DAT+ + R WY
Sbjct: 2147 GCPVAAAATPTRSNAGDATKVTLARTWY 2174
>04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743
Length = 105
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 316 KIIERETMCLPYCQYRCKCIEHKKLEKRERMCLPCC 423
KI++ C+ C RC HKK + R CL CC
Sbjct: 38 KIVDPGKDCVGACDARCSEHSHKK--RCSRSCLTCC 71
>03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544
Length = 136
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 210 RGRHPQLPATLVRKLSSISPPAHTT 136
RG +P+ A LVR+LSS +PP T
Sbjct: 50 RGANPEALAALVRELSSAAPPTAAT 74
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 568 QSCSKQISVKRKHVPTSSDSTEKWEKNTK 654
+SC + S+ R+ + S+ E+WE+N +
Sbjct: 240 ESCEAEKSILRRRLSESASEVERWERNNR 268
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -1
Query: 234 ADSS*HRLRGRHPQLPATLVRKLSSISPPA 145
A+++ HRLRG HP+ P L R SS+S PA
Sbjct: 39 AEAAFHRLRGSHPE-PLAL-RLASSLSSPA 66
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 274 VRPEPTRDVHLPGRGLLVAQTPRTPPAASRDFGTQIELDFATRSHHLFPYPLPS 113
+ P P R++ R L V+ R P A R L + +HHLF + LP+
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRYPALARRLLHLHASLGLVSYAHHLFDHLLPA 136
>03_05_0028 -
19988940-19989477,19989631-19989673,19990956-19991037,
19991063-19991122
Length = 240
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 600 SFDRDLFRAALCAHPRHRTRPVFCLRQQVQRYFLVAGLCVVGHEERRDRLDCITFV 433
S D F +C+ P H T FC+R YF + C+ +++ R +D + F+
Sbjct: 38 SSDGSGFDERVCSVP-HNTLMAFCVRNPNLHYFSLPATCIT-YDQFRKAIDKLQFL 91
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 328 RETMCLPYCQYRCKCIEHKKLEKRERMCLPCCQQGYKRNTIQPISPLLVSNYTQTSHQEV 507
R+T LP C++ C C E K+ + + P C+Q +R ++ + +
Sbjct: 347 RDTTVLP-CRHMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAEEQQQPSPDSPI 405
Query: 508 TLNLLSETEHRARP 549
+N +E EH+ +P
Sbjct: 406 KVNSKAE-EHQQQP 418
>04_04_0748 + 27738155-27740290
Length = 711
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 286 ERVVVRPEPTRDVHLPGRGLLVAQTPRTPPAASRDFGTQIELDFATRSHHLFPYPL-PSI 110
++ +++P P R +P L+ P+ PP A L F T H P+ L PS+
Sbjct: 278 QQPLLQPPPKRHHSVPDNLFLLHNQPQPPPPAPAQC-----LPFPT-LHSAVPFQLQPSM 331
Query: 109 SHPR 98
HPR
Sbjct: 332 QHPR 335
>01_01_1063 - 8386813-8387236,8387322-8387779
Length = 293
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 163 AQFAYQSRGKLRVASSESVLRGVRALADGHPSSVQDGPRLSQMRC 297
A FA + L VA+ +S G+ A+A+GHP D RL+ C
Sbjct: 103 AMFAEHAYMLLAVAAPDSSAAGL-AVAEGHPRVPSDPARLTWQTC 146
>03_06_0504 - 34394442-34394729
Length = 95
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 210 RGRHPQLPATLVRKLSSISPP 148
RG +P+ A LVR+LSS +PP
Sbjct: 43 RGANPEALAALVRELSSAAPP 63
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 278 RGPS*TDEGCPSARARTPRSTDSEDA 201
R P D+ CPS+ ART S+ +DA
Sbjct: 151 RHPGYNDQSCPSSPARTTPSSGGDDA 176
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 328 RETMCLPYCQYRCKCIEHKKLEKRERMCLPCCQQGYKR 441
R+T LP C++ C C E K+ + + P C+Q +R
Sbjct: 352 RDTTVLP-CRHMCMCSECAKVLRYQTNRCPICRQPVER 388
>07_01_0176 - 1244704-1245102
Length = 132
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 102 GWEMEGSGYGNRWCERVAKSSSICVPK 182
GW G+GYG +A+ S++C+ K
Sbjct: 61 GWGAWGAGYGGAGGHEMARPSTVCMEK 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,942,232
Number of Sequences: 37544
Number of extensions: 486025
Number of successful extensions: 1717
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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