Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5h14
(699 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U48437-1|AAB96331.1| 650|Homo sapiens amyloid precursor-like pr... 34 0.56
BC012889-1|AAH12889.1| 650|Homo sapiens amyloid beta (A4) precu... 34 0.56
AD000864-1|AAB50173.1| 650|Homo sapiens amyloid precursor-like ... 34 0.56
BC118637-1|AAI18638.1| 159|Homo sapiens hypothetical protein FL... 33 1.3
BC118557-1|AAI18558.1| 159|Homo sapiens hypothetical protein FL... 33 1.3
AK023286-1|BAB14510.1| 159|Homo sapiens protein ( Homo sapiens ... 33 1.3
BC101685-1|AAI01686.1| 402|Homo sapiens chromosome 6 open readi... 31 3.0
BC101681-1|AAI01682.1| 402|Homo sapiens chromosome 6 open readi... 31 3.0
BC038240-1|AAH38240.1| 402|Homo sapiens chromosome 6 open readi... 31 3.0
AL390721-1|CAC69824.1| 402|Homo sapiens protein ( Human DNA seq... 31 3.0
AK126279-1|BAC86513.1| 497|Homo sapiens protein ( Homo sapiens ... 30 6.9
AF003378-1|AAB65782.1| 127|Homo sapiens immunoglobulin heavy ch... 30 6.9
AF003377-1|AAB65781.1| 127|Homo sapiens immunoglobulin heavy ch... 30 6.9
BX640624-1|CAE45778.1| 519|Homo sapiens hypothetical protein pr... 30 9.1
AL161636-3|CAI19558.1| 116|Homo sapiens proline rich 9 protein. 30 9.1
>U48437-1|AAB96331.1| 650|Homo sapiens amyloid precursor-like
protein 1 protein.
Length = 650
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 579 RAALCAHPRHRTRPVFCLRQQ-VQRYFLVAGLCVVGHEERRDRLDCIT 439
R+ CAHP H+ P CL + V LV C H+ER D+ + T
Sbjct: 124 RSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESST 171
>BC012889-1|AAH12889.1| 650|Homo sapiens amyloid beta (A4)
precursor-like protein 1 protein.
Length = 650
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 579 RAALCAHPRHRTRPVFCLRQQ-VQRYFLVAGLCVVGHEERRDRLDCIT 439
R+ CAHP H+ P CL + V LV C H+ER D+ + T
Sbjct: 124 RSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESST 171
>AD000864-1|AAB50173.1| 650|Homo sapiens amyloid precursor-like
protein 1 protein.
Length = 650
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 579 RAALCAHPRHRTRPVFCLRQQ-VQRYFLVAGLCVVGHEERRDRLDCIT 439
R+ CAHP H+ P CL + V LV C H+ER D+ + T
Sbjct: 124 RSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESST 171
>BC118637-1|AAI18638.1| 159|Homo sapiens hypothetical protein
FLJ13224 protein.
Length = 159
Score = 32.7 bits (71), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 286 ERVVVRPEPTRDVHLPGRGLLVAQTPRTPPAASR 185
E + V P PT V+ PG L + PRTP A R
Sbjct: 113 EALAVSPTPTLQVNAPGAKLRAPKAPRTPEALGR 146
>BC118557-1|AAI18558.1| 159|Homo sapiens hypothetical protein
FLJ13224 protein.
Length = 159
Score = 32.7 bits (71), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 286 ERVVVRPEPTRDVHLPGRGLLVAQTPRTPPAASR 185
E + V P PT V+ PG L + PRTP A R
Sbjct: 113 EALAVSPTPTLQVNAPGAKLRAPKAPRTPEALGR 146
>AK023286-1|BAB14510.1| 159|Homo sapiens protein ( Homo sapiens
cDNA FLJ13224 fis, clone OVARC1000008. ).
Length = 159
Score = 32.7 bits (71), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 286 ERVVVRPEPTRDVHLPGRGLLVAQTPRTPPAASR 185
E + V P PT V+ PG L + PRTP A R
Sbjct: 113 EALAVSPTPTLQVNAPGAKLRAPKAPRTPEALGR 146
>BC101685-1|AAI01686.1| 402|Homo sapiens chromosome 6 open reading
frame 194 protein.
Length = 402
Score = 31.5 bits (68), Expect = 3.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 472 VSNYTQTSHQEVTLNLLSETEHRARPVARMRAQSCSKQISVKRKHVPTS-SDSTEKWEKN 648
V + + +HQ+ + + + EHR + +R R + K S KRKH S SDS + + N
Sbjct: 154 VEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSESDTN 213
Query: 649 T 651
+
Sbjct: 214 S 214
>BC101681-1|AAI01682.1| 402|Homo sapiens chromosome 6 open reading
frame 194 protein.
Length = 402
Score = 31.5 bits (68), Expect = 3.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 472 VSNYTQTSHQEVTLNLLSETEHRARPVARMRAQSCSKQISVKRKHVPTS-SDSTEKWEKN 648
V + + +HQ+ + + + EHR + +R R + K S KRKH S SDS + + N
Sbjct: 154 VEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSESDTN 213
Query: 649 T 651
+
Sbjct: 214 S 214
>BC038240-1|AAH38240.1| 402|Homo sapiens chromosome 6 open reading
frame 194 protein.
Length = 402
Score = 31.5 bits (68), Expect = 3.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 472 VSNYTQTSHQEVTLNLLSETEHRARPVARMRAQSCSKQISVKRKHVPTS-SDSTEKWEKN 648
V + + +HQ+ + + + EHR + +R R + K S KRKH S SDS + + N
Sbjct: 154 VEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSESDTN 213
Query: 649 T 651
+
Sbjct: 214 S 214
>AL390721-1|CAC69824.1| 402|Homo sapiens protein ( Human DNA
sequence from clone RP11-424I5 on chromosome 6 Contains
a novel gene, ESTs, STSs, GSSs and a CpG island. ).
Length = 402
Score = 31.5 bits (68), Expect = 3.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 472 VSNYTQTSHQEVTLNLLSETEHRARPVARMRAQSCSKQISVKRKHVPTS-SDSTEKWEKN 648
V + + +HQ+ + + + EHR + +R R + K S KRKH S SDS + + N
Sbjct: 154 VEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSESDTN 213
Query: 649 T 651
+
Sbjct: 214 S 214
>AK126279-1|BAC86513.1| 497|Homo sapiens protein ( Homo sapiens
cDNA FLJ44293 fis, clone TRACH2022425, highly similar
to Ig alpha-1 chain C region. ).
Length = 497
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 395 RGRECVYHAVNKDTNVIQSSRSLRSSC 475
RG +C + V V+QS RSLR SC
Sbjct: 15 RGVQCQFQLVESGGGVVQSGRSLRLSC 41
>AF003378-1|AAB65782.1| 127|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 127
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 395 RGRECVYHAVNKDTNVIQSSRSLRSSC 475
RG +C H V V+Q RSLR SC
Sbjct: 6 RGVQCQVHVVESGGGVVQPGRSLRLSC 32
>AF003377-1|AAB65781.1| 127|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 127
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 395 RGRECVYHAVNKDTNVIQSSRSLRSSC 475
RG +C H V V+Q RSLR SC
Sbjct: 6 RGVQCQVHVVESGGGVVQPGRSLRLSC 32
>BX640624-1|CAE45778.1| 519|Homo sapiens hypothetical protein
protein.
Length = 519
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 395 RGRECVYHAVNKDTNVIQSSRSLRSSC 475
RG +C H V V+Q RSLR SC
Sbjct: 39 RGVQCQVHLVESGGGVVQPGRSLRLSC 65
>AL161636-3|CAI19558.1| 116|Homo sapiens proline rich 9 protein.
Length = 116
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 331 ETMCLPYCQYRCKCIEHKKLEKRERMCLPCCQQ 429
E +CLP CQ+ C + K L + + +CL CQ+
Sbjct: 30 EEVCLPTCQHPC---QDKCLVQAQEVCLSQCQE 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,647,170
Number of Sequences: 237096
Number of extensions: 2593344
Number of successful extensions: 8751
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8751
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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