Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h04
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    31   0.20 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    27   1.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   4.3  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   5.7  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   7.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   9.9  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   9.9  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -3

Query: 546 SRAPRPHIPRSRTPHSDVNESSGRFAILSFYKSSAATID 430
           SR+P PH  RSR+P++D  E S R ++   Y+S + + D
Sbjct: 115 SRSPSPHEARSRSPYND--ERSDRRSMSPRYRSRSRSPD 151


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 615 FTLMMSAINILRKVSDMFE*GSCSRAPRPHIP-----RSRTPHSDVNESSG 478
           F + ++ + + +  +   E GSC+ A R HIP      S T   D+ ++SG
Sbjct: 101 FPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASG 151


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 414 IDICLCLWLQPTTYRMTGSQTFHCSH*HHCVAYDYEGCVGAVPSSNCLTQTY 569
           + +C+C+      +R +G    +C H  +   YD   C   +PS N  T+ Y
Sbjct: 210 LHVCVCVKCHGREHRSSGKNFVYCDHCSNVYHYD---C-SPLPSLNKETRNY 257


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 467 IANLPLLSLTSLCGVRLRGMCGRGALEQLPHSNISDTFLNI 589
           +ANL +L+     G+ + GM G G  E    +NISDT + I
Sbjct: 403 MANLEVLTSK---GLTICGMIGNGVGENKKGTNISDTQIGI 440


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 169 INYEILYNQSY*IDIKVNK 225
           INYEI   Q+Y IDIK+ +
Sbjct: 42  INYEIEMGQTYPIDIKMTR 60


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 298 SASLDGDGDIYVYSC 342
           S S DG  DIY YSC
Sbjct: 225 SISPDGQADIYCYSC 239


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 491 LTSLCGVRLRGMCGRGALEQLPHSNISD 574
           +  LCG     +CG   +EQ P+ + +D
Sbjct: 384 MNCLCGTHFCFLCGAYLMEQNPYKHFND 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,754
Number of Sequences: 5004
Number of extensions: 49164
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)