Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h04
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    31   0.63 
01_05_0005 - 16886553-16886946,16887079-16887404                       29   2.6  
12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387...    28   5.9  
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403...    28   5.9  

>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -3

Query: 540 APRPHIPRSRTPHSDVNES---SGRFAILSFYK 451
           APRP++ +S  PH+DV+E+    G FA ++  K
Sbjct: 476 APRPYVSKSTEPHNDVDEAVCQQGSFAAVTLNK 508


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 627 VISSFTLMMSAINILRKVSDMFE*GSCSRAPRPHIPRSRTPH-SDVNE 487
           ++SS  L++ A++I+  V  M    S  R+P P +  SR PH SD ++
Sbjct: 7   LLSSVLLVLLALSIITLVPRMPSPQSFFRSPPPRLINSRVPHPSDASD 54


>12_01_0005 +
           34977-35516,35620-35777,35889-37192,37532-37626,
           38738-38816,38938-38954
          Length = 730

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 172 LSCNHCPKVRLPPLIIVDSCI*IHYGALIRKIHFSVG 62
           L CN C  V +PP +I D    +  GA I   H   G
Sbjct: 571 LHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCG 607


>11_01_0006 +
           36564-37103,37207-37364,37476-38779,39119-39213,
           40324-40402,40524-40540
          Length = 730

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 172 LSCNHCPKVRLPPLIIVDSCI*IHYGALIRKIHFSVG 62
           L CN C  V +PP +I D    +  GA I   H   G
Sbjct: 571 LHCNSCKDVMMPPQVISDEVEPVDRGATILVEHTPCG 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,163
Number of Sequences: 37544
Number of extensions: 291660
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)