Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h04
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92807-2|CAD21652.1|  689|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92807-1|CAB07264.1|  747|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AB039949-1|BAC06512.1|  747|Caenorhabditis elegans kinesin protein.    29   2.3  
AB017164-1|BAA32661.1|  689|Caenorhabditis elegans Kinesin like ...    29   2.3  
AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    29   3.0  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   5.3  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>Z92807-2|CAD21652.1|  689|Caenorhabditis elegans Hypothetical
           protein K11D9.1b protein.
          Length = 689

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 546 SRAPRP-HIPRSRTPHSDVNESSGRFAILSFYKSSAATID 430
           +R P P ++PRS  P  DV  S+G FA     ++  A ID
Sbjct: 210 ARVPSPKNVPRSY-PQQDVQPSNGNFAFAEMIRNYRAQID 248


>Z92807-1|CAB07264.1|  747|Caenorhabditis elegans Hypothetical
           protein K11D9.1a protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 546 SRAPRP-HIPRSRTPHSDVNESSGRFAILSFYKSSAATID 430
           +R P P ++PRS  P  DV  S+G FA     ++  A ID
Sbjct: 268 ARVPSPKNVPRSY-PQQDVQPSNGNFAFAEMIRNYRAQID 306


>AB039949-1|BAC06512.1|  747|Caenorhabditis elegans kinesin protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 546 SRAPRP-HIPRSRTPHSDVNESSGRFAILSFYKSSAATID 430
           +R P P ++PRS  P  DV  S+G FA     ++  A ID
Sbjct: 268 ARVPSPKNVPRSY-PQQDVQPSNGNFAFAEMIRNYRAQID 306


>AB017164-1|BAA32661.1|  689|Caenorhabditis elegans Kinesin like
           protein (klp-7) protein.
          Length = 689

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 546 SRAPRP-HIPRSRTPHSDVNESSGRFAILSFYKSSAATID 430
           +R P P ++PRS  P  DV  S+G FA     ++  A ID
Sbjct: 210 ARVPSPKNVPRSY-PQQDVQPSNGNFAFAEMIRNYRAQID 248


>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 155 SKSQIAAFDNSRLMYLNSLWSPHPKNPF 72
           S   +AAF  +R   LN+LW+    NPF
Sbjct: 77  SSDDVAAFAKARTKMLNNLWTMDNTNPF 104


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 546 SRAPRP-HIPR-SRTPHSDVNESS 481
           SR PRP  +PR SR+PHSD  E S
Sbjct: 104 SRRPRPTRLPRPSRSPHSDAPEPS 127


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 211 YRFNMIDYIKFHNLSCNHCPKV 146
           Y ++  +   +HN SCN CPKV
Sbjct: 188 YNYHHNNCCNYHNHSCNACPKV 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,405
Number of Sequences: 27780
Number of extensions: 273773
Number of successful extensions: 612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)