Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h04
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.87 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 522 GCVGAVPSSNCLTQTY 569
           GC GA+  S+C+T T+
Sbjct: 69  GCCGAIRESHCMTITF 84


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 262 DNDIWRAKHGGFSASLDGDGDI 327
           + + +R   G  S  LDG GD+
Sbjct: 569 NEETYRGGKGALSCLLDGKGDV 590


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 262 DNDIWRAKHGGFSASLDGDGDI 327
           + + +R   G  S  LDG GD+
Sbjct: 569 NEETYRGGKGALSCLLDGKGDV 590


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 262 DNDIWRAKHGGFSASLDGDGDI 327
           + + +R   G  S  LDG GD+
Sbjct: 569 NEETYRGGKGALSCLLDGKGDV 590


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 559  LKHIRYLSQYIY 594
            LKHIR +S +IY
Sbjct: 1808 LKHIRAVSDFIY 1819


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 559  LKHIRYLSQYIY 594
            LKHIR +S +IY
Sbjct: 1804 LKHIRAVSDFIY 1815


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,692
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)