Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5h03
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0726 + 31514480-31514932 33 0.18
09_04_0347 + 16887182-16888504 29 3.9
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.9
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355... 29 5.1
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250... 28 6.8
08_01_0039 + 284948-285301 28 6.8
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688 28 6.8
10_08_0002 - 13986969-13989338 28 9.0
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927... 28 9.0
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 28 9.0
>01_06_0726 + 31514480-31514932
Length = 150
Score = 33.5 bits (73), Expect = 0.18
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Frame = -1
Query: 448 SLWQAGSGGGGHASRKQSAEILSRAL---ESSPCTTW--HS*WYNILPS*ARK-----*S 299
S W + SG GG R+ SA + S L + SP W H W +L A++ S
Sbjct: 34 SSWPSLSGAGGTGRRRGSAVVRSLQLVVRDVSPAAGWCGHRAWRRLLRRLAQETRCICSS 93
Query: 298 AS*EISASDKPITDRSGPASIETNFD 221
+S +AS +PIT AS NFD
Sbjct: 94 SSPSGAASSRPITFGYDAASYAKNFD 119
>09_04_0347 + 16887182-16888504
Length = 440
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 283 SASDKPIT--DRSGPASIETNFDSEISEFPSGS 191
+ASD P + SGP SIE N DSE S P S
Sbjct: 80 AASDSPRAAGNPSGPRSIEVNSDSEDSALPLAS 112
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 283 SASDKPITDRSGPASIETNFDSEISEFPSGSRGRYQSQRLRPTRKAA--ARILLHVFQTS 110
+ +P RSG ++ S S RG+ +S RP +AA A +++ F +
Sbjct: 1210 AVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRPGPEAAIIAGMVIGFFTFA 1269
Query: 109 AKRTIVSCILNSDALCTPPN 50
IV+C+ S PP+
Sbjct: 1270 LLLAIVACVCCSKKKKRPPH 1289
>12_01_0450 -
3552701-3552865,3552971-3553195,3553306-3553473,
3554514-3554629,3554735-3554887,3554978-3555121,
3556667-3557276
Length = 526
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 552 NDGRITFAHFARILNFIGV-LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQK 713
N G IT+ L +G L+ PE L+ I +S T+DY EFL A + K
Sbjct: 366 NSGTITYDELKNGLKRVGSDLMEPEIQALMDAADIDNSGTIDYGEFLAATLHMNK 420
>10_01_0240 -
2506901-2507008,2507950-2508322,2508418-2508612,
2508771-2508885,2510027-2510132,2510253-2510366,
2510521-2510538
Length = 342
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 462 IRRLCCLLATIASRNLPLKPYFQDYEMVAKN--DGRITFAHFARILNFIGVLVSPEDFNL 635
++ L C+ AS L E+V KN D R++ RI+ F+G V E
Sbjct: 72 VKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLS----QRIVVFVGSPVKDEKLET 127
Query: 636 LVRRFIKDSYTLDYVEF 686
+ ++ K + +LD VEF
Sbjct: 128 IGKKLKKYNVSLDVVEF 144
>08_01_0039 + 284948-285301
Length = 117
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 490 VASRQQSRLICH*SSLWQAGSGGGGHASRK 401
VA R++ R C W AG GGGG AS +
Sbjct: 17 VARRRRHRRSCGDVGGWWAGVGGGGKASMR 46
>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
Length = 241
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 459 ATDLAYGRPVPAEEDMPLGSNLRKSYRGRWNLHRARPGTADG 334
A GR V AEE++ LG R+ RW+ RA G G
Sbjct: 23 AAQYQMGRGVVAEEEVELGGGGRRRGSKRWSKKRAGRGGYGG 64
>10_08_0002 - 13986969-13989338
Length = 789
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 410 GMSSSAGTGLP*ARSVANQTTLLPTSYNSFEESTFETLFSGL 535
G S + G GL A +AN L P ++FE E+L GL
Sbjct: 11 GESGNGGAGLGLAAFIANGEDLGPIVRHAFESGKPESLLQGL 52
>06_02_0365 +
15190841-15190988,15191296-15191754,15192692-15192782,
15192902-15193003,15193126-15193228,15193548-15193685,
15193912-15193974,15195042-15195124,15196312-15196411,
15196640-15196717,15196834-15196941,15197987-15198067,
15200179-15200220,15200221-15200283,15200426-15200482
Length = 571
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 456 WQIRRLCCLLATIASRNLPLKPYFQDYE 539
WQ+ ++ LLA IAS +P + YE
Sbjct: 531 WQVSKVAALLAPIASSGMPTTLQYPPYE 558
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 552 NDGRITFAHFARILNFIGV-LVSPEDFNLLVRRFIKDSYTLDYVEFLKAVEAVQK 713
N G+ITF L +G L E + L+ + +S T+DY EF+ A + K
Sbjct: 450 NSGQITFEELKVGLKKVGANLQESEIYALMQAADVDNSGTIDYGEFIAATLHMNK 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,720
Number of Sequences: 37544
Number of extensions: 411818
Number of successful extensions: 1506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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