Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g20
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 30 0.26
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 29 0.60
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 1.4
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 4.2
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 7.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.4
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 25 9.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.8
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 25 9.8
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 30.3 bits (65), Expect = 0.26
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 225 IKFELPDNSGESTKYLITLLIKE-IHPSIGEIRKKLQVKHIEEQELIKIREVIALCCNQI 401
+K +L D S T YL K ++ ++ + K K + EL+K+RE +AL
Sbjct: 23 VKQKLGDGSF-GTVYLAQRKEKNGLYETVAVKKLKNSSKPKPKHELLKLRESLALRKISK 81
Query: 402 KKCVVNLLGIFKLEYNQGIFLQESRQCHVERL 497
C+++LL F Y + E C++ +L
Sbjct: 82 HPCLIDLLETFMDPYRNIFLVMEFMDCNLFQL 113
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 634 SNVWSIQFTKYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 491
S W + F ++I +E + LS +KLL + WS++ N H+ L
Sbjct: 412 STDWQLGF-RHISKRSLEVTKLSKEKLLAYTKKLWSLIVNFEYTHAPL 458
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 231 FELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVK-HIEEQELIKIREVIALCCNQIKK 407
FEL N E Y+ L ++ P I E+R+ + ++ H E+ + +K++E + + I +
Sbjct: 442 FELEINP-EGPNYINLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAE 500
Query: 408 CVVNLLGI 431
L GI
Sbjct: 501 LQDELRGI 508
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 385 SAITSRILINSCSSMCL----TCNFFRISPILGCISLIKSVIKYF 263
+AI S ++I++ + + L T F+R+ P+ CI I ++ F
Sbjct: 472 NAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISVIVSVF 516
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 228 KFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQE 356
KF D+S + L+ L+ + H I E+R + IEE+E
Sbjct: 406 KFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQHDIEERE 448
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 240 PDNSGESTKYLITLLIKEIHPSIGEIRK 323
P+ +G+ST ++ LLI+++HP+ G + +
Sbjct: 552 PNGAGKST--MLKLLIEQLHPTSGIVSR 577
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 261 TKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALC 389
T+ + +L K + I I ++ Q+ H++ Q++I+ R LC
Sbjct: 983 TERIPAMLCKMLELLIALITEREQILHVDIQDIIRTRLAQQLC 1025
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Frame = -1
Query: 558 NYCF------FFQDVGLLYLICLCTIPISLRD 481
NYCF FF LLY+I L +P+ RD
Sbjct: 132 NYCFDVHCNSFFPSFVLLYVIQLFLLPVITRD 163
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 288 KEIHPSIGEIRKKLQVKHIEEQELIKIRE 374
+E+ + ++RKKLQ K E L +RE
Sbjct: 568 EELDKLVEDVRKKLQEKEEAESSLRSVRE 596
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 306 IGEIRKKLQVKHIEEQELIKIREVIALCCNQIKKCVVNLLGIFKLEYNQ 452
+G IR ++ H+ Q+ IK+ E + L Q+ K + NL+ K + Q
Sbjct: 2 VGNIRFLRKIAHLV-QKTIKVVESLGLGWKQLVKKLSNLMARIKKIFTQ 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,509
Number of Sequences: 5004
Number of extensions: 49215
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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