Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g19
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 29 0.67
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 27 1.5
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 3.5
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 3.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 4.7
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 25 6.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.2
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 8.2
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 8.2
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.2
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/70 (22%), Positives = 38/70 (54%)
Frame = +3
Query: 186 SEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLERMLPNIESSKEALP 365
S+ +A KL+ +I + I+ L N+M E+ +E + T+L + P ++ ++++P
Sbjct: 743 SDLEALKLYRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITINPTLKQKEDSMP 802
Query: 366 KLGYHGRIKY 395
+ +I++
Sbjct: 803 RSALPSKIEH 812
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Frame = +3
Query: 84 MDQFFEKLQKDGKNSVDNIIKW--MKDSKIIDEVK--ASEEKARKLFEGVPDINNIDINK 251
+++F EK+ D + + +W + K E K A + + F+G PD+ + D++
Sbjct: 145 VNEFNEKVGLDRVREILDCCEWNLSQVDKSFSEEKDDAGDFYLPERFKGSPDMQSTDLDN 204
Query: 252 LKEVINKMA-AEQKKNVE--ELTTMLERML 332
L + +N++ A+ +KN + + +LE++L
Sbjct: 205 LMKEMNQIRDADLEKNEKKAKALNLLEKLL 234
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 2.7
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = +3
Query: 120 KNSVDNI---IKWMKDSKIIDEVKASEEKARKLFEGVPDINNID--INKLKEVINKMAAE 284
K V+NI + + D K+ +KA EKARK+ V D +N+ KE I+
Sbjct: 88 KPKVENIRYEVNEVIDKKVAPCIKAFNEKARKIGSKVLDGDNLRELYTTGKERIHFFI-- 145
Query: 285 QKKNVEELTTMLERMLPNIES-SKEALPKLGYHGRIKYKFAFHEPWKPL 428
V+ L +R++ + + S++ KL Y I A+H +KP+
Sbjct: 146 ----VDVLIPFFQRVVQEVRTISRDIAEKLQYFWEIHAIPAYHH-YKPI 189
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 252 LKEVINKMAAEQKKNVEELTTMLERML 332
LKE+ K+ +Q+KN E++ T+ ++ L
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKKL 268
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 177 VKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLERMLPNIESSKE 356
V SE + ++LF + ++KE +NK+ + Q++N E L+ ++++ +E
Sbjct: 462 VSESEAERKRLFSSAQEKQL----QMKETVNKLTSLQEQN-NEFDRQLKEQEEDLQNKEE 516
Query: 357 ALPKL 371
L +L
Sbjct: 517 ELTEL 521
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 262 TSFNLFMSILLISGTPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFCSFSKNWS 86
T LF+ L+ T +N F F FT+ + ++I L + L+ + +S+NWS
Sbjct: 457 TYLTLFLLALI---TLTNGFTVFVGHTFTAGNFIAAYITLPIFLVLYV-AHKLWSRNWS 511
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 228 INNIDINKLKEVIN-KMAAEQKKNVEELTTMLERMLPNI--ESSKEALPKLGYHGRIKYK 398
+ ++D++KL A + +E +++ +++ + +SKE LPK + ++ +
Sbjct: 8 LKSVDVSKLDNGSTISFRAREDGFLESISSSSGKLVDMVLDSTSKECLPKFSFQNKLDFY 67
Query: 399 FAFHE 413
F F +
Sbjct: 68 FLFSD 72
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 275 HFVDNLFQFIYVYIVDIRNAFEQ 207
HF+ ++F FIY +V + N F +
Sbjct: 604 HFIFSVFTFIYFSLVPLNNLFHR 626
>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 340 SNQVKKLYQNLGTTGELSTSLPSTNPGSH 426
+ QV+ + N +T TS PS+NPG +
Sbjct: 78 AEQVQTSFSNPASTPLTQTSSPSSNPGKN 106
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 253 NLFMSILLISGTPSNNFRAFSSEAFTSSII 164
NLF S+L T + N R F A TSS I
Sbjct: 3774 NLFDSLLSSIETATKNMRTFKELAETSSFI 3803
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 258 LSIYLCLYC*YPERLRTTFAP 196
L +Y YC Y +RT FAP
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAP 419
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 8.2
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +3
Query: 117 GKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKN 296
G NSVD++++ K ++ E + RKL+ + L NK+ +E +
Sbjct: 296 GLNSVDSLVENAKALPLVGEYLSDYISHRKLYSSETQSQRLKREVLD--ANKIYSESVVD 353
Query: 297 VEELTTMLERML 332
+++ T++E +
Sbjct: 354 LDKCRTLVEETI 365
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 343 NQVKKLYQNLGTTGELSTSLPSTNPGSHWIG 435
N VKK+ ++ T LS S +++P + W G
Sbjct: 399 NSVKKMNEDGADTSLLSVSEVTSHPPTEWTG 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,430
Number of Sequences: 5004
Number of extensions: 44800
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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