Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g19
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 427 WIGCCCWRKLKNLRRNLVVV 486
           W    C R+L+NL R  ++V
Sbjct: 398 WCAVSCLRELRNLGRKTIMV 417


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 352 LLDSMFGNILSSMVVNSSTFFFCSAAILLITSFNLFMSI 236
           L+ ++ GN L S  V+ +TF      I+L  S+N+   I
Sbjct: 312 LVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHI 350


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -2

Query: 274 ILLITSFNLFMSILLISG----TPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFC 107
           I+ I  F+L  +I  + G     P  N  A  ++ F   ++  S++    +   F P F 
Sbjct: 172 IIAIWLFSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFL 231

Query: 106 SFSKNWSI 83
                W I
Sbjct: 232 IIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -2

Query: 274 ILLITSFNLFMSILLISG----TPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFC 107
           I+ I  F+L  +I  + G     P  N  A  ++ F   ++  S++    +   F P F 
Sbjct: 48  IIAIWLFSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFL 107

Query: 106 SFSKNWSI 83
                W I
Sbjct: 108 IIYSYWFI 115


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 351 KEALPKLGYHGRIKYKFAFH 410
           K+A+P L  HG++ ++  F+
Sbjct: 295 KKAVPPLSLHGQLLWREFFY 314


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 424 GFQGSWKANLYLILPWYPS 368
           GF   W+ NL  ++ ++P+
Sbjct: 68  GFLSYWRGNLANVIRYFPT 86


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 424 GFQGSWKANLYLILPWYPS 368
           GF   W+ NL  ++ ++P+
Sbjct: 68  GFLSYWRGNLANVIRYFPT 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,225
Number of Sequences: 438
Number of extensions: 3100
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)