Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g17
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   108   9e-25
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.21 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.64 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   3.4  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.9  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  108 bits (259), Expect = 9e-25
 Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 1/192 (0%)
 Frame = +2

Query: 128 SVFSIISHRYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAV 307
           ++ ++   + TRA+R ++A+  Y   + + ++ A    PE+  K L VA +SD+GLCG +
Sbjct: 53  TIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGI 111

Query: 308 HTGVSKVIRNRLSEPGA-ENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAS 484
           H+ +S++IR  L +P   EN  +  +G+K R  L R   +        IG   P+F +A 
Sbjct: 112 HSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEAL 171

Query: 485 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQ 664
           Q+++ IL    ++    ++YNKF S VS+      LYT K+I  +  L+AY+  D +V Q
Sbjct: 172 QISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINESPNLSAYEVSD-EVHQ 230

Query: 665 SYTEFSLASLLF 700
              EF+ A+ +F
Sbjct: 231 PLMEFAFANAIF 242


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +2

Query: 239 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 403
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 404 LQRLYGKHIISVA 442
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 482  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 661
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 662  QSY 670
            QS+
Sbjct: 2516 QSF 2518


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 358 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 224
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 358 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 224
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 33   VK*FHKIKQISKKNGFFNKKSYLDYN 110
            VK  HKI +  K  G  NKK+Y  +N
Sbjct: 954  VKKLHKINEALKDYGSVNKKAYEQFN 979


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 414 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 542
           C   ++L  L +S++   LS  +  +PL  + RDT L+   +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 AMTSDRGLCGAVHTGVSKVIRNRLSE 349
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 499 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 347
           SS ++  V  + W +  L  +TND  +++S+ DT R  S     DV+   F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +3

Query: 330 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 509
           S+  S++ +  +S  S    +   S    + +TS  L   S  S  L+ + ++   L+S 
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142

Query: 510 RDTSLVPERSFTTSSSLWSRTPSPT 584
             TS     S TTSSSL S + + T
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNST 167


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 490 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 317
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,135
Number of Sequences: 5004
Number of extensions: 60039
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)