Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g16
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375...    35   0.062
11_01_0522 - 4103138-4103926                                           31   1.0  
11_04_0475 - 18176578-18177252,18180101-18180664                       30   1.3  
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    30   1.3  
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124...    30   1.3  
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    30   1.8  
04_03_0515 + 16698589-16701066                                         29   3.1  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   7.1  
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854...    28   7.1  
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325...    27   9.4  
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    27   9.4  
06_01_0873 - 6693397-6694038,6694231-6694370,6694713-6694930,669...    27   9.4  
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814     27   9.4  
01_01_0404 + 3053558-3053939,3054028-3054123,3054217-3054309,305...    27   9.4  

>03_05_0175 +
           21513767-21513903,21534361-21535385,21537375-21537547,
           21537849-21538679
          Length = 721

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 341 PQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQHRRGRRDQ 198
           PQE++  Q Q  +  P E+   EQ +    +QQ   NRPQ ++ ++ Q
Sbjct: 567 PQEQQQQQQQKQQIKPQEKMGKEQTKPEEQQQQQKTNRPQEQQHKKPQ 614


>11_01_0522 - 4103138-4103926
          Length = 262

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 545 AAHDMDHDEPVAAPRDG 595
           AAH+ DHDEP AAP  G
Sbjct: 163 AAHEADHDEPAAAPAYG 179


>11_04_0475 - 18176578-18177252,18180101-18180664
          Length = 412

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 515 SIHESEARESAAHDMDHD---EPVAAPRDGPVRLLPEPAAP 628
           S H S +  S A DMD D   EP AA    P    P PA P
Sbjct: 3   SAHSSHSSVSTAADMDEDDDDEPSAASAAAPAPPAPAPAPP 43


>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
            27739775-27739832,27739923-27740038,27740117-27740237,
            27740348-27740635,27740817-27740987,27741091-27741741,
            27742515-27742676,27742764-27743904,27743992-27744152,
            27744239-27744564,27745678-27745825
          Length = 1296

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -2

Query: 455  ALCVFWTDTVIKICISIFDYRFRDFHQHRPEM*AVDHHPQEKEILQNQLPKRNPTERETS 276
            A C  +    +K+CI  FD +    HQ + E  A   + +  +     L K   T+R   
Sbjct: 1164 AKCKKFAKPDLKVCIEEFDEKLSKVHQEKKEQEATTRNAEAHKQRIGSLDKLMVTKRTGK 1223

Query: 275  EQGRDHSLRQQ 243
            ++G+   + ++
Sbjct: 1224 DKGKSAEVAEE 1234


>01_06_1409 -
           37111954-37112061,37112295-37112330,37112434-37112498,
           37112610-37112688,37112967-37113041,37113623-37114147
          Length = 295

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -2

Query: 380 HQHRPEM*AVDHHPQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQHRRGRRD 201
           HQH  +        Q++++ Q Q  ++   +++  +Q +    +QQ   N+PQH   +  
Sbjct: 49  HQHLQQQ--QQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQNQPQHSSQQSQ 106

Query: 200 QT 195
           QT
Sbjct: 107 QT 108


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +2

Query: 458 SAHAAVGRLDARGRTPGLLSIHESEARESAAHDMDHDEPVAAPRDGPVRLLPEPAAPPR 634
           S+  AVGR  + GR+  + S+  S  R  AA+   +  P +AP   P    P P AP R
Sbjct: 270 SSAPAVGRSPSVGRSSSISSLTSSINRP-AANGGRNSAPSSAPSSRPSSPGPRPRAPVR 327


>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 367 QKCKL*ITIHRKRRFCKTSSQNGTLRNAKRLNKAAIILCASSTAPTAHNTVGAAV---TR 197
           +K +L  T  R+RR   TS  + T     R   ++I+   ++ + TA +T  AA     R
Sbjct: 45  EKPRLLTTARRRRRRRSTSVMSQTTAPMSRRRLSSILASTATASSTAASTTTAATASPAR 104

Query: 196 PSP 188
           PSP
Sbjct: 105 PSP 107


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = -2

Query: 428  VIKICISIFD-YRFRDFHQHRPEM*AVDHHPQEKEILQNQLPKRNPT---ERETSEQG 267
            V++ C S  D YRF DFH H     +          + N +P  + +    R T  QG
Sbjct: 3359 VLEYCFSDMDPYRFSDFHIHEESRVSNQQSEIMNSSISNSMPSSSSSVSYHRNTQRQG 3416


>02_02_0284 -
           8547126-8547187,8547306-8547395,8547810-8547861,
           8548209-8548284,8550513-8550632,8553334-8553423,
           8553842-8554024,8554125-8554185,8554437-8554477,
           8554563-8554727,8555699-8555776,8556137-8556282
          Length = 387

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 341 PQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANR 228
           PQ K+  + + P+R P E E  ++ R +S   + G  R
Sbjct: 180 PQRKDTHRAKSPRRQPKEHEVDKKRRSYSPANKDGDRR 217


>09_06_0172 +
           21329904-21331512,21331595-21331740,21332333-21332556,
           21333689-21334448
          Length = 912

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 381 SPAPPRNVSCRSPSTGKGDFAKPAPKTEP 295
           SP PP ++    PST +G+   PAP + P
Sbjct: 328 SPPPPADI----PSTSRGEVTPPAPPSPP 352


>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
            11064598-11064816,11065301-11065429,11066502-11068031,
            11068654-11069013,11069086-11069205,11069727-11069897,
            11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 542  SAAHDMDHDEPVAAPRDGPVRLLPEPAAP 628
            S+   + H+  V  P +GPV  LPE  AP
Sbjct: 1198 SSGGSLSHNTSVLQPSNGPVASLPEVDAP 1226


>06_01_0873 -
           6693397-6694038,6694231-6694370,6694713-6694930,
           6695040-6695133,6695247-6695483,6696192-6696260,
           6696513-6696636
          Length = 507

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 144 YVEIESYEFVQWAQCGEGLVTAAPTVLWAVGAVLLAQRMIXXXXXXXXXXXVPFWELVL 320
           +  +ES+   +W +CG  +     T L +V A  LA R             VPF+  VL
Sbjct: 377 FTAVESWASSRWPRCGFFVTGGGGTRLISVNAFRLAWRTAYVVACTAVAAVVPFFNDVL 435


>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
          Length = 775

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 356 AVDHHPQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQ 222
           A D+H  E E  Q  L +RN T+   +EQG  +    +HG +  Q
Sbjct: 490 AFDNHQSEDE--QVPLNQRNGTDDFNNEQGVGNQTGDEHGQDNHQ 532


>01_01_0404 +
           3053558-3053939,3054028-3054123,3054217-3054309,
           3054432-3054517,3054633-3054896,3055076-3055203,
           3055306-3055401,3055580-3055685,3055778-3055942
          Length = 471

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 492 AAG-PLAYYLYTRAKPESQPLMIWITTNP 575
           AAG  L Y+L   A P S PL++W+   P
Sbjct: 65  AAGRALFYWLIEAADPASAPLVLWLNGGP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,598
Number of Sequences: 37544
Number of extensions: 388984
Number of successful extensions: 1520
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)