Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g11
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    30   0.36 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   1.9  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.7  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 498 LPWVNDYLGNPETASYIPSYMMGYGQHMSLWER 596
           +PW NDY   P  AS   SY       +S WER
Sbjct: 35  MPWSNDYTEIPTNASGGNSYFQSSEFSLSRWER 67


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 99  AAPRADEQRVRPSLTTAATPPASLRCSKSCVN 4
           A+P A +Q VRPSL +    PAS+    S  N
Sbjct: 52  ASPSALKQNVRPSLNSVQQTPASIDAVASSSN 83


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 463 GPPLSDYCLASRYLGSMITLATQKQRLTYRP 555
           GP   DY L + Y G   TL   KQ+LT  P
Sbjct: 115 GPDAKDYVLYTEYTGDSATL---KQQLTVNP 142


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 554  LHDGLWTTHEPMGTII 601
            LH+ LW T + MGT++
Sbjct: 2082 LHEHLWPTRDDMGTLV 2097


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,014
Number of Sequences: 5004
Number of extensions: 55107
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)