Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g11
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    31   1.1  
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    30   2.0  
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    29   3.4  
06_03_1217 - 28484007-28487237                                         29   4.5  
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    29   4.5  
08_02_0843 - 21759183-21759556,21760255-21762913                       28   7.9  

>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 11  HDFEHRRDAGGVAAVVSDGRTRCSSARGAA 100
           H   HRR       V SDG T C SA G +
Sbjct: 185 HYISHRRHDKAAGTVASDGSTNCESANGCS 214


>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 478 PTTGARNL*PKGKKQSLPKTSTIIKSKEAVELSNSLKESCCTTVSQA 338
           P   +R L    +  SLP T+ ++  ++ V LS     SCC + S A
Sbjct: 26  PLLHSRRLALPPRPASLPATTAVVHPRKGVRLSKLHAASCCDSASAA 72


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 478 PTTGARNL*PKGKKQSLPKTSTIIKSKEAVELSNSLKESCCTTVSQA 338
           P   +R L    +  SLP T  ++  ++ V LS     SCC + S A
Sbjct: 26  PLLHSRRLTLPSRLASLPATIAVVHPRKGVRLSKLHAASCCDSASAA 72


>06_03_1217 - 28484007-28487237
          Length = 1076

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 11  HDFEHRRDAGGVAAV--VSDGRTRCSSARGAA 100
           HD+ H R AGG  A   + D R R + ARGA+
Sbjct: 872 HDWLHERRAGGAGAAPQLLDWRARLNVARGAS 903


>03_05_0327 - 23154014-23154942,23155169-23155316,23155606-23156622,
            23156753-23157217,23160258-23161247
          Length = 1182

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 225  ISLAGTIPEITNNLTRKYDSLKPNFIRNLEQIISECVNACETVVQQDSFKELLNSTAS 398
            + L G+    +  L   +DSL+ NF    + ++ + V++ E+  Q +S K L+ S  S
Sbjct: 1123 VRLLGSDSSASEKLHLAHDSLRENFFEIDKHVMDDLVDSEESRQQLESAKALIRSILS 1180


>08_02_0843 - 21759183-21759556,21760255-21762913
          Length = 1010

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 216 INQISLAGTIPEITNNLTRKYDSLKPNFIR-NLEQIISECVN 338
           +NQ +L G+IP+  N  +  Y  L  N +  ++   +S+C+N
Sbjct: 383 LNQNNLIGSIPQFVNCSSLNYIDLSYNLLSGDIPASLSKCIN 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,993
Number of Sequences: 37544
Number of extensions: 362872
Number of successful extensions: 952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)