Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g08
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0057 - 31326067-31326097,31326453-31326517,31326960-313270...    32   0.41 
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931...    29   2.9  
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827...    29   2.9  
07_03_0154 + 14509979-14512033                                         29   3.8  

>03_06_0057 -
           31326067-31326097,31326453-31326517,31326960-31327032,
           31327134-31327185,31327320-31327366,31327694-31327728
          Length = 100

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 50  SIYLFICNVTKVNGGGVLYLYRPKDITSECTFSNQLNFDITF 175
           +++  +C   KV   G+ Y  RP  +   C F +QLN D +F
Sbjct: 24  AVWKCLCYPPKVEAHGLWYSARPCSVCDYCCFQSQLNTDKSF 65


>12_02_0718 +
           22491241-22491897,22491989-22492126,22493017-22493142,
           22493389-22493493,22493650-22494046,22494144-22494273,
           22494358-22494652,22494736-22495005
          Length = 705

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 617 IKNCGINDWFDEHLSKCS-LPVEKLGYAPVIA 709
           + +CG+ND   +HL+KCS L V KLG    I+
Sbjct: 466 LTDCGVNDAALQHLAKCSELLVLKLGLCSSIS 497


>07_03_1263 +
           25279899-25279985,25280263-25282372,25282700-25282793,
           25283178-25283314,25283419-25283454,25283602-25283642,
           25284036-25284125,25284229-25284284,25284947-25285030,
           25285072-25285150
          Length = 937

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 2   KTTDMENAIR---NIFSYWSIYLFICNVTKVNGGGVLYLYRPKDITSE 136
           KT D ++A R   N+    S     C VTKV G    +L+ PKD+ S+
Sbjct: 715 KTGDEKSAYRTYHNMIQRVSCVYGCCWVTKVGGSTSKFLWMPKDVKSQ 762


>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 225 VSRLRNISVIVSDNPIPNVMSKFNWFEKVHSEVMSLGLYRYSTPPPL 85
           VSR RN++   S +  PNV  +F  F+  ++    L ++     PPL
Sbjct: 619 VSRARNVACYFSHSCSPNVFVQFVLFDHYNAAYPHLMIFAMENIPPL 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,394
Number of Sequences: 37544
Number of extensions: 334241
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)