Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g08
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 39 0.004
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 39 0.004
U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical pr... 35 0.052
Z81564-11|CAB04576.1| 436|Caenorhabditis elegans Hypothetical p... 35 0.069
AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical... 32 0.37
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 31 0.64
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 31 0.64
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 31 0.64
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.85
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 31 1.1
Z92806-3|CAB07256.1| 202|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z72510-3|CAA96653.1| 366|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z68214-2|CAA92443.1| 352|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 29 4.5
Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical ... 28 7.9
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 7.9
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 509 TSARKRSLSNCYPRNESTCTINNVTYCYTSGVVCDGIKNCGINDWFDEHLSKCS 670
TS+ RS + C P C + + C +C+G +CG ND+ DEHLS CS
Sbjct: 3991 TSSECRS-AQCDPPLRFRCAHSRL--CLNILQLCNGFNDCGPNDFSDEHLSMCS 4041
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 509 TSARKRSLSNCYPRNESTCTINNVTYCYTSGVVCDGIKNCGINDWFDEHLSKCS 670
TS+ RS + C P C + + C +C+G +CG ND+ DEHLS CS
Sbjct: 3991 TSSECRS-AQCDPPLRFRCAHSRL--CLNILQLCNGFNDCGPNDFSDEHLSMCS 4041
>U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical
protein F14B8.6 protein.
Length = 345
Score = 35.1 bits (77), Expect = 0.052
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 458 NSTINTELNADIYQITATSARKRSLSNCYPRN--ESTCTINNVTYCYTSGVVCDGIKNC 628
N+ I N + + +TAT RK + ++ Y N E T+NN YCYT G +G K C
Sbjct: 132 NTPIQVTSNTNQWTLTATINRKCNGADQYGFNCNEQCSTVNNDYYCYTCG--SNGQKTC 188
>Z81564-11|CAB04576.1| 436|Caenorhabditis elegans Hypothetical
protein K05C4.11 protein.
Length = 436
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 539 CYPRNESTCTINNVTYCYTSGVVCDGIKNCGINDWFDEH--LSKCSLPVEKLGYAPVIAV 712
C + C + C S +VCDGI NC D+ DE S+ + LG++ ++
Sbjct: 330 CVEQGHGICASRS-RLCIHSSLVCDGIHNCVEGDFSDEQHCYSREIITSAALGFSLIVLT 388
Query: 713 IAAVLC 730
+ ++C
Sbjct: 389 MLVLVC 394
>AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical
protein Y105E8A.7a protein.
Length = 906
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +2
Query: 563 CTINNVTYCYTSGVVCDGIKNCGINDWFDEHLSKCSLPVEKLGYAPVIAVIAAVLC 730
CT + + C + + C+G+ NCG D CSL EK G V VIAAV C
Sbjct: 767 CTYSKL--CIDAKLRCNGLDNCGYGVQDDTDEQHCSLK-EKTGDRTV--VIAAVFC 817
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +2
Query: 287 SLRFPTNFNTQCELNREAFVIYKRNKCRR---LCDFEDLYQTERYVTTTVSGRLRLHFIS 457
+++ T+F+ L F + NKCR +C D+ + ++ G L S
Sbjct: 178 NMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSGDVCIPDSFLC---DGDLDCDDAS 234
Query: 458 NSTINTELNADIYQITATSARKRSLSNCYPRNESTCTI--NNVTYCYTSGVVCDGIKNCG 631
+ N + NA + S + + +C +C + + C C+GIK C
Sbjct: 235 DEK-NCQTNAPSEE-EYLSGQADHMHSCSAAGMYSCGTKGSEIGVCIPMNATCNGIKECP 292
Query: 632 INDWFDEHLSKCS 670
+ D +H S+C+
Sbjct: 293 LGDDESKHCSECA 305
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +2
Query: 287 SLRFPTNFNTQCELNREAFVIYKRNKCRR---LCDFEDLYQTERYVTTTVSGRLRLHFIS 457
+++ T+F+ L F + NKCR +C D+ + ++ G L S
Sbjct: 178 NMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSGDVCIPDSFLC---DGDLDCDDAS 234
Query: 458 NSTINTELNADIYQITATSARKRSLSNCYPRNESTCTI--NNVTYCYTSGVVCDGIKNCG 631
+ N + NA + S + + +C +C + + C C+GIK C
Sbjct: 235 DEK-NCQTNAPSEE-EYLSGQADHMHSCSAAGMYSCGTKGSEIGVCIPMNATCNGIKECP 292
Query: 632 INDWFDEHLSKCS 670
+ D +H S+C+
Sbjct: 293 LGDDESKHCSECA 305
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +2
Query: 287 SLRFPTNFNTQCELNREAFVIYKRNKCRR---LCDFEDLYQTERYVTTTVSGRLRLHFIS 457
+++ T+F+ L F + NKCR +C D+ + ++ G L S
Sbjct: 178 NMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSGDVCIPDSFLC---DGDLDCDDAS 234
Query: 458 NSTINTELNADIYQITATSARKRSLSNCYPRNESTCTI--NNVTYCYTSGVVCDGIKNCG 631
+ N + NA + S + + +C +C + + C C+GIK C
Sbjct: 235 DEK-NCQTNAPSEE-EYLSGQADHMHSCSAAGMYSCGTKGSEIGVCIPMNATCNGIKECP 292
Query: 632 INDWFDEHLSKCS 670
+ D +H S+C+
Sbjct: 293 LGDDESKHCSECA 305
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 551 NESTCTINNVTYCYTSGVVCDGIKNCGINDWFDEHLSKCSLP 676
NE C NV C + VVCDG K+C +D DE KCS P
Sbjct: 332 NEFRCESTNV--CVPTVVVCDGWKDC--HDGSDE--KKCSHP 367
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 551 NESTCTINNVTYCYTSGVVCDGIKNCGINDWFDEHLSKCSLP 676
NE C NV C + VVCDG K+C +D DE KCS P
Sbjct: 332 NEFRCESTNV--CVPTVVVCDGWKDC--HDGSDE--KKCSHP 367
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +2
Query: 287 SLRFPTNFNTQCELNREAFVIYKRNKCRR---LCDFEDLYQTERYVTTTVSGRLRLHFIS 457
+++ T+F+ L F + NKCR +C D+ + ++ G L S
Sbjct: 178 NMQSSTDFHDDVHLVDPTFFANEDNKCRSGYTMCHSGDVCIPDSFLC---DGDLDCDDAS 234
Query: 458 NSTINTELNADIYQITATSARKRSLSNCYPRNESTCTI--NNVTYCYTSGVVCDGIKNCG 631
+ N + NA + S + + +C +C + + C C+GIK C
Sbjct: 235 DEK-NCQTNAPSEE-EYLSGQADHMHSCSAAGMYSCGRKGSEIGVCIPMNATCNGIKECP 292
Query: 632 INDWFDEHLSKCS 670
+ D +H S+C+
Sbjct: 293 LGDDESKHCSECA 305
>Z92806-3|CAB07256.1| 202|Caenorhabditis elegans Hypothetical
protein K10G4.3 protein.
Length = 202
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +2
Query: 470 NTELNADIYQITATSARKRSLSNCYPRNESTCTINNVTYCYTSGVVCDGIKNCGINDWFD 649
N + N IY+ +++ N Y RNE N+ Y + + + I D+ +
Sbjct: 123 NNQNNDKIYE-AIKKEKEKIRKNVYERNEQLRDFKNIPYGFQPTLELHNLMQDQIEDFIE 181
Query: 650 EHLSKCSLPVEKLG 691
E+L + + KLG
Sbjct: 182 EYLGQYLEKLGKLG 195
>Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical
protein T01H3.3 protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 267 KNIPFYYLYDFQQTLIRSVNLIEKHL*FTKEINVVAYVISKTFTKLRDMSRRRSQ 431
K +P + + T +R+V K + T +VVA + +T KLRD +S+
Sbjct: 121 KPVPIFITNRPETTTVRAVRTTTKKVETTTSDDVVAREVERTLKKLRDAEDGKSE 175
>Z72510-3|CAA96653.1| 366|Caenorhabditis elegans Hypothetical
protein F53B7.4 protein.
Length = 366
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 554 ESTCTINNVTYCYTSGVVCDGIKNCG 631
E + N YC++S + CDG+ CG
Sbjct: 140 EYSLCYNCSKYCFSSSLECDGLDTCG 165
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
protein B0024.8 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 467 INTELNADIYQITATSARKRS-LSNCYPRNESTCTINNVTYCYTSGVVCDGIKNCGINDW 643
+N+++++++ +I A K +SN + R+++T ++N + T+G GI G
Sbjct: 776 LNSKIDSEMEKICAVLLSKSGDVSNAFIRDDATDSLNKLVKAATAGKALQGIILAGAKSK 835
Query: 644 FDEHLSKCS 670
+ S C+
Sbjct: 836 NNTIRSSCA 844
>Z68214-2|CAA92443.1| 352|Caenorhabditis elegans Hypothetical
protein C10C5.2 protein.
Length = 352
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = +2
Query: 131 SECTFSNQLNFDITFGMGLSDTITLILRNLDTITYECSIEIVTKSKEY---------TIL 283
SE SN LN + G+ D + + +L+ + ++E K+ E T +
Sbjct: 185 SELKVSNSLNLNCDIGITDKDLLEIKATSLNISSQLITVEGAKKALERFLKRGKKTDTFV 244
Query: 284 LSLRFPTNFNTQCELNREAFVIYK 355
L +R P NFN Q + ++ VI K
Sbjct: 245 LEIRRPENFNAQEHIIPKSLVIRK 268
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 491 IYQITATSAR-KRSLSNCYPRNESTCTINNVTYCYTSGVVC 610
+ + TATS R KR C PR + +C+ TY C
Sbjct: 16 LIEATATSTREKRQSCGCAPRVQPSCSCQQTTYAQPPQYSC 56
>Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical
protein T16H12.6 protein.
Length = 566
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 170 TFGMGLSDTITLILRNLDTITYE-CSIEIVTKSKEYTILLSLRFPTNFNT 316
+F LS T+TL+LRN + +T++ C + S + +L S +F + +T
Sbjct: 44 SFEETLSPTVTLVLRNNEEVTFDRCLLSFY--SNYFRVLFSSKFRDSKST 91
>AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical
protein Y38A10A.6 protein.
Length = 520
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 548 RNESTCTINNVTYCYTSGVVCDGIKNCGIN 637
+ + T+N++ +C GVVC I + GI+
Sbjct: 410 KQQQAITLNDLEFCNIHGVVCTNIMSRGID 439
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 578 VTYCYTSGVVCDGIKNCGINDWFDE 652
V C + V+CDGI++C +D FDE
Sbjct: 291 VVACELTAVLCDGIQDC--SDGFDE 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294,884
Number of Sequences: 27780
Number of extensions: 341450
Number of successful extensions: 917
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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