Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g06
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.30
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 28 0.91
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.1
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 3.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 3.7
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 26 3.7
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 26 3.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 4.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 4.8
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 25 6.4
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 6.4
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 8.4
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 29.5 bits (63), Expect = 0.30
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +1
Query: 148 LKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENF-WKSNALE----FLVLHMLK 312
L+ T+ + L D NLK + I T + W+ L F LH ++
Sbjct: 3033 LQETISLNALDHDNPNLKNIKGSSIYDAVAQAVVNTHTSIVWEFKHLGKTSYFSCLHFIR 3092
Query: 313 RLNE-CLFTGKIANFWCKEHNLLENIKKETCKT 408
LN CL G+ AN KE + +EN K+ +T
Sbjct: 3093 FLNTFCLIFGRDANKLSKEKSRIENGFKKIKET 3125
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 0.91
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 413 NHVLHVSFFMFSSKLCSLHQKLAILPVNKHSFNLFNMCKTRNSKAFDF 270
N +L + + K S+ + AIL N+ + +L N+ + N + F+F
Sbjct: 276 NQLLFIRNLLHERKYVSIDELDAILEENEKNKHLINILQKENKRVFEF 323
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 319 SISLTCVKLGIPKRSTSKNSHLF*KIPIKIQFLYNNLIK 203
++ L +K I K S NSHLF +IP I F+ + +++
Sbjct: 668 NLELLMIKSIIFKNGKSLNSHLFLQIP-NINFIVSTILR 705
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 2.1
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -3
Query: 452 FLSMLLITIDNLLNHVLHVSFFMFSSKLCSLHQKLAILPVNKHSFNLFNMCKTRNSKAFD 273
F S L+ +NL+ + + F+FSS S Q + +LP LFN T N+K
Sbjct: 526 FKSNLVPYPENLIASIERLIPFIFSSY--SNSQSVPLLPCPTQRHLLFNTSSTDNTKELS 583
Query: 272 FQKFSSVLKDSHK 234
S HK
Sbjct: 584 MSASSENSDCPHK 596
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 483 YVDYFWVYEF-ISVYVIDYNR*FIKPCLTCFLF-YVFKQIMFFTPKVGYFAC 334
++D YE +S+ ++D F P F Y+F +++F+T +V + C
Sbjct: 364 FIDKLESYESQLSLILVDIEAKFYDPSNEDIQFRYIFLKMVFWTARVNLYQC 415
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 166 IIKLLRDTQNLKTLSSYYIKTVFLW 240
++KLL DT LK Y+K+ LW
Sbjct: 884 LLKLLADTPYLKEGVEVYLKSFLLW 908
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 3.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 169 IKLLRDTQNLKTLSS--YYIKTVFLWESFRTDENFWK-SNALEFLVLHMLKRLNECLFTG 339
+K L TQN S+ YY +VF+W+ + E + L F L +L + G
Sbjct: 33 LKNLISTQNTGEESNPIYYTNSVFVWKIYPNSEKVVQVGQGLSFKPLSLLGKCGYIAAGG 92
Query: 340 KIANF 354
++ F
Sbjct: 93 QLGEF 97
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 411 PCLTCFLFYVFKQIMFFTP 355
PC++ +LFY K F+TP
Sbjct: 402 PCISHYLFYSKKYSQFYTP 420
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 4 NNSKIDLDKISATKINQYFVVPKPSNDDYSWRLAF-PFQERFYI 132
NNS + S+ + N +++ P SW + F P + R+YI
Sbjct: 1016 NNSFLSRVSPSSLEENVFYIQHPPPKSYLSWSVTFDPQRRRYYI 1059
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 232 FLWESFRTDENFWKSNAL-EFLVLHMLKRLNECLFTGKIANFWCKEH 369
F W+ +D +F++S L E++ L L + LF + ++ W KEH
Sbjct: 274 FEWQD-HSDISFFQSAELQEYIELFPGSPLAQALFAFRNSDLWHKEH 319
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 295 VLHMLKRLNECLFTGKIANFWC 360
+LH + L+ K+ANFWC
Sbjct: 278 ILHRVFPFARGLWEDKVANFWC 299
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 372 IMFFTPKVGYFACE 331
+MF PKV YF CE
Sbjct: 778 VMFTPPKVHYFTCE 791
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 370 NLLENIKKETCKTWFNKLSIVINNIDRNKFVN 465
NLL + + K + + LS++++N + FVN
Sbjct: 88 NLLSGVAGKKSKNYLSALSLLLSNSNVQPFVN 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,364
Number of Sequences: 5004
Number of extensions: 42728
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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