Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g06
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0415 + 3037720-3039849 33 0.17
02_01_0422 - 3084940-3087072 31 0.52
02_01_0412 - 3005600-3007759 29 2.1
02_01_0413 - 3028946-3031111 28 4.8
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 27 6.4
01_05_0316 + 20813347-20813636,20816017-20816095,20816160-20816333 27 6.4
06_03_0861 - 25486801-25486997,25487334-25487904,25488874-254889... 27 8.5
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 27 8.5
>02_01_0415 + 3037720-3039849
Length = 709
Score = 32.7 bits (71), Expect = 0.17
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = +1
Query: 133 YNKY-NLKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFWKSNALEFLVLHML 309
YN + N+ +L I+K LR NL TL I + F+ E+ DE F LH+L
Sbjct: 395 YNNFTNITGSLHILKSLR---NLTTL---LIGSNFIHEAMPEDETIDG-----FENLHVL 443
Query: 310 KRLNECLFTGKIANFWCK----EHNLLENIK-KETCKTWFNKLSIV 432
+N C TGKI N+ K E LL N + TW N L+ +
Sbjct: 444 A-INNCALTGKIPNWLSKLKKLELLLLHNNQLSGPIPTWINSLNFL 488
>02_01_0422 - 3084940-3087072
Length = 710
Score = 31.1 bits (67), Expect = 0.52
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Frame = +1
Query: 133 YNKY-NLKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFWKSNALEFLVLHML 309
YN + N+K+TL I+K LR NL L I F+ E+ DE + + +H
Sbjct: 395 YNNFTNIKNTLHILKSLR---NLNVL---LIGGNFMHEAMPQDETIDGFENIFGISIH-- 446
Query: 310 KRLNECLFTGKIANFWCKEHNL----LENIK-KETCKTWFNKLSIV 432
+C TGKI ++ K NL L N K + TW N L+ +
Sbjct: 447 ----DCALTGKIPSWLSKLGNLAVLDLSNNKLRGPIPTWINSLNFL 488
>02_01_0412 - 3005600-3007759
Length = 719
Score = 29.1 bits (62), Expect = 2.1
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Frame = +1
Query: 133 YNKY-NLKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFWKSNALEFLVLHML 309
YN + N+ +TL I+K LR+ LS ++ + F E+ DE L L
Sbjct: 407 YNNFTNITNTLHILKSLRN------LSVLFMGSNFKNEAMPQDEKI--DGFKNILGLG-- 456
Query: 310 KRLNECLFTGKIANFWCKEHN-----LLENIKKETCKTWFNKLSIV 432
+N+C +GK+ N++ K N L N TW N L+ +
Sbjct: 457 --INDCALSGKVPNWFSKLRNLQVLVLYNNQLSGPIPTWINSLNFL 500
>02_01_0413 - 3028946-3031111
Length = 721
Score = 27.9 bits (59), Expect = 4.8
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 133 YNKY-NLKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFWKSNALEFLVLHML 309
YN + N+ +TL I+K NL+ L+ + F+ E+ DE ++ L
Sbjct: 408 YNNFKNITNTLHILK------NLRNLTVLLLGGNFMHEAMPEDETIDGFKNIQGL----- 456
Query: 310 KRLNECLFTGKIANFWCKEHNL 375
+N+C TGKI N+ K +L
Sbjct: 457 -GINDCALTGKIPNWLSKLRSL 477
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 166 IIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFWKSNALEFLVLHML 309
II+ + + +NL+TL Y +KT L E ++ F + L VLH++
Sbjct: 588 IIQKVLEMENLRTLIIYSVKTEMLIEEKEFEDMFTRLRKLR--VLHLV 633
>01_05_0316 + 20813347-20813636,20816017-20816095,20816160-20816333
Length = 180
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +1
Query: 316 LNECLFTGKIANFWCKEHNLLENIKKETCKTWFNKLSIVI 435
L E GK+ W E L ++ K+ C+ W+ + ++
Sbjct: 106 LQEAQLDGKVVGNWSAEDKLEKDDKRRLCQWWWRHWNAIL 145
>06_03_0861 -
25486801-25486997,25487334-25487904,25488874-25488976,
25489281-25489376,25490319-25490449
Length = 365
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 331 FTGKIANFWCKEHNLLENIKKETCKTWFNKLSIVINNIDRNKFVNPEIVYIYF 489
FTG ++ C + LEN+++ C T ++S + N ++N P+ +F
Sbjct: 287 FTGLLSQIICFTYAGLENVEQGCCATGMFEMSYLCN--EKNPLTCPDADKYFF 337
>01_03_0271 +
14454681-14456949,14457222-14457476,14458800-14458864,
14459053-14459171,14459270-14459324
Length = 920
Score = 27.1 bits (57), Expect = 8.5
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +1
Query: 229 VFLWESFRTDENFWKSNALEFLVLHMLKRLNECLFTGKIANFWCKEHNLLENIKKETCKT 408
+ LW S D F E ++L+ +LN+ F GK F K L+N+
Sbjct: 111 ISLWNSAMVDY-FRAGYPEEVIILYKRLKLNQIGFNGKTITFVMKSCTELKNLYLGK-GV 168
Query: 409 WFNKLSIVINNIDRNKFVNPEIVYIYFTXKK 501
+ L + ++ NKFV ++ +Y K
Sbjct: 169 HADSLKLALSG---NKFVGSSLIGLYSKFSK 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,272,871
Number of Sequences: 37544
Number of extensions: 202965
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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