Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g06
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    31   0.36 
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   1.4  
Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z78018-2|CAB01447.1|  434|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 22/67 (32%), Positives = 37/67 (55%)
 Frame = +1

Query: 94  WRLAFPFQERFYIYNKYNLKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFWK 273
           ++L+     R++ Y++ N K++ K +KLL+ T +   LSS    TV L    R DE  W+
Sbjct: 235 YKLSCRMDVRWFPYDRQNYKTSFKPMKLLQQTIDYWPLSS----TVNLGNMARNDE--WE 288

Query: 274 SNALEFL 294
             + EF+
Sbjct: 289 VISFEFV 295


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 400 CKTWFNKLSIVINNIDRNKFVNPEIVYIYF 489
           C TW  +   + N+I  N+F+NPE+ Y  F
Sbjct: 398 CTTWNQEP--INNSIQSNQFINPELFYFIF 425


>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -2

Query: 471 FWVYEFISVYVIDYNR*FIKPCLTCFLFYVFKQIMFFTPKVGYFACEQTFVQSL*HV 301
           +W Y+  S  +I+Y      P     LFY+ K   FF  K+        +   + H+
Sbjct: 571 YWKYKLYS-RLIEYEEKLWIPAPLSLLFYILKTFCFFLSKIPIIGVIPNYFMKILHI 626


>Z78018-2|CAB01447.1|  434|Caenorhabditis elegans Hypothetical
           protein W07G4.2 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 91  SWRLAFPFQERFYIYNKYNLKSTLKIIKLLRDTQNLKTLSSYYIKTVFLWESFRTDENFW 270
           SW+     Q     Y K N+KS     KL R   N   + ++  +  F+W  F   +  +
Sbjct: 175 SWKYFPSMQHELIKYLKPNVKSEFG--KLPRSKNNSYIICAHTRRGDFVWGDFAASDPTF 232

Query: 271 KSNALEFL 294
              A+EF+
Sbjct: 233 VRRAVEFI 240


>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
           protein F42E11.1 protein.
          Length = 1266

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 319 NECLFTGKIANFWCKEHNLLENIKKETCKTWFNKLSI 429
           N CLFT      +C   +LL+++ ++  K WF++ ++
Sbjct: 115 NACLFTMAERRLYCIRKHLLQSVLRQDAK-WFDENTV 150


>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 359 HQKLAI-LPVNKH-SFNLFNMCKTRNSKAFDFQKFSSVLKDS 240
           H+ LA+ + V +H S  L   CKTR  KAF    FS +L +S
Sbjct: 28  HRWLAVFVSVMRHFSLVLAENCKTRFFKAFAILHFSCLLSES 69


>Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical
           protein F59A1.3 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 422 NLLNHVLHVSFFMFSSKLCSLHQKLAILPVNKHSFNLFNMCKTRNSKAFDF 270
           N+L    HVSF+  +   C+ +  + +L V    +    +CK   SK F F
Sbjct: 78  NVLGLPRHVSFWYIALN-CTCYSMIMLLLVFHFLYRYLAVCKPNMSKLFSF 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,431
Number of Sequences: 27780
Number of extensions: 228330
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)