Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5g02
         (790 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P04148 Cluster: Fibrohexamerin precursor; n=2; Bombyx|R...    51   4e-05
UniRef50_O62605 Cluster: Fibrohexamerin precursor; n=2; Obtectom...    45   0.002
UniRef50_Q9XMS2 Cluster: Orf1386; n=2; Alveolata|Rep: Orf1386 - ...    36   1.2  
UniRef50_A0CUX3 Cluster: Chromosome undetermined scaffold_29, wh...    36   1.2  
UniRef50_Q14UU6 Cluster: Low molecular weight silk protein; n=1;...    34   4.7  
UniRef50_A5FFW7 Cluster: Integral membrane sensor signal transdu...    33   6.2  
UniRef50_A7HZT2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  
UniRef50_Q2NG61 Cluster: Predicted transcriptional regulator; n=...    33   8.2  

>UniRef50_P04148 Cluster: Fibrohexamerin precursor; n=2; Bombyx|Rep:
           Fibrohexamerin precursor - Bombyx mori (Silk moth)
          Length = 220

 Score = 50.8 bits (116), Expect = 4e-05
 Identities = 34/135 (25%), Positives = 60/135 (44%)
 Frame = +2

Query: 371 IRRPCPSFNIDCIRSYFQYHASCVPHYEPIPDPLYLQKYSLYIANSNITVELNDVKVQGL 550
           I RPC   +  CI  +   ++ C+P    IP    +  +   I   N T   +++  +  
Sbjct: 23  IYRPCYLDDYKCISDHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNLITRNH 82

Query: 551 LNAKIVEFYINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPIELVDNLYVGYGVVTI 730
              ++ EFY N RT K VL ++   L  E+ R L +++   +E + L   +   Y ++ +
Sbjct: 83  DQCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHM-SFKEDVVLSFYINGSYPLIRL 141

Query: 731 TATMPYINNIQLTNA 775
           T      NN  L +A
Sbjct: 142 TTVFDKGNNFDLCSA 156


>UniRef50_O62605 Cluster: Fibrohexamerin precursor; n=2;
           Obtectomera|Rep: Fibrohexamerin precursor - Galleria
           mellonella (Wax moth)
          Length = 218

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 29/138 (21%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
 Frame = +2

Query: 365 DSIRRPCPSFNIDCIRSYFQYHASCVPHYE-PIPDPLYLQKYSLYIANSNITVELNDVKV 541
           +++ RPC   ++ CIR     +++C  +    IP    + +++      N +   N++ +
Sbjct: 20  NNVVRPCRLDDLKCIRDNISANSNCNANVRGSIPSEYVIPRFNFETPFFNASYIDNNLII 79

Query: 542 QGLLNAKIVEFYINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPIELVDNLYVGYGV 721
           +     ++ EF+ N + D  VLA++   L +E+ R L+++    QE      ++   Y +
Sbjct: 80  RNNDACRVSEFFFNVKADTSVLAVDCPNLDLESDRTLIQH-ASLQEETTYNYHIRGIYPL 138

Query: 722 VTITATMPYINNIQLTNA 775
           + +T  +   + + L NA
Sbjct: 139 IRLTTNLLNADRLNLCNA 156


>UniRef50_Q9XMS2 Cluster: Orf1386; n=2; Alveolata|Rep: Orf1386 -
           Tetrahymena pyriformis
          Length = 1386

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 5   DIYNVQNKSNNCNFQFVYVYISLYFRTKKRP 97
           +I+N QNK NN N++ + + I +Y+  KKRP
Sbjct: 435 NIHNTQNKINNINWKKIILEIKIYYVNKKRP 465


>UniRef50_A0CUX3 Cluster: Chromosome undetermined scaffold_29, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_29,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 192

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
 Frame = +2

Query: 398 IDCIRSYFQYHASCVPHYEPIPDPL---YLQKYSLYIANSNITVEL----NDVKVQGLLN 556
           ID +    Q +  CV +++ + DP+   +L+K    ++ +   + +    ND+  Q +  
Sbjct: 34  IDIVNQAVQMYRKCVEYFDSLQDPIKYYFLEKIQTALSETKTLMLIMNTKNDIAEQSMRK 93

Query: 557 AKIVEFYINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPIELVDNLYVGY 715
              + F   K+    +  I+ +K  V+   +++K   +A++    V N+   Y
Sbjct: 94  PPKISFTAEKKLTNEIDQIQIKKARVQQVNLMIKINNEAEQQSLNVQNMVNNY 146


>UniRef50_Q14UU6 Cluster: Low molecular weight silk protein; n=1;
           Yponomeuta evonymellus|Rep: Low molecular weight silk
           protein - Yponomeuta evonymella (Bird-cherry ermine
           moth)
          Length = 217

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 23/125 (18%), Positives = 56/125 (44%)
 Frame = +2

Query: 368 SIRRPCPSFNIDCIRSYFQYHASCVPHYEPIPDPLYLQKYSLYIANSNITVELNDVKVQG 547
           +I RPC   +++CI+     ++ C  +         +  +       + +   N++ ++ 
Sbjct: 19  NIVRPCHLQDLECIQDNLAANSHCKTNIAGTAPTATVSNFRFECPFFHSSYIENNLIMRN 78

Query: 548 LLNAKIVEFYINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPIELVDNLYVGYGVVT 727
           + +  + EF+ N  TDK +L+I+     +E  R ++++ R   E      ++   Y ++ 
Sbjct: 79  VDSCVVSEFFFNMDTDKALLSIDCLDFGLEADRTVLQH-RSLHEDSVYQYHINSTYPILR 137

Query: 728 ITATM 742
           +T  M
Sbjct: 138 LTTNM 142


>UniRef50_A5FFW7 Cluster: Integral membrane sensor signal
           transduction histidine kinase precursor; n=2;
           Flavobacteriales|Rep: Integral membrane sensor signal
           transduction histidine kinase precursor - Flavobacterium
           johnsoniae UW101
          Length = 466

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +2

Query: 515 TVELNDVKVQGL-LNAKIVEFYINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPIEL 691
           +V++N V VQ L LN KI+E   N + +KLV     +   +   ++L   +R+ Q P+ L
Sbjct: 78  SVDVNPVFVQFLDLNKKIIEKSPNLKNEKLVFHNNKDHFQLFDTKLLGNKIRQIQVPLHL 137

Query: 692 VDNLYVGYGVVTIT 733
             +  +GY ++ ++
Sbjct: 138 -HSKKIGYLIIAMS 150


>UniRef50_A7HZT2 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Putative
           uncharacterized protein - Campylobacter hominis (strain
           ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 447

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 625 FFRFNSKH*LICSFINVKLHDFGVQKTLDFHVVQF-DSNIRI 503
           FF   +K+ LI S+IN+K+  + + K   F V++F D NI+I
Sbjct: 219 FFNHTNKYKLITSYINIKIKKY-IPKEYFFEVIKFLDDNIKI 259


>UniRef50_Q2NG61 Cluster: Predicted transcriptional regulator; n=1;
           Methanosphaera stadtmanae DSM 3091|Rep: Predicted
           transcriptional regulator - Methanosphaera stadtmanae
           (strain DSM 3091)
          Length = 289

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 524 LNDVKVQGLLNAKIVEF-YINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPIELVDN 700
           LN   +   LN K+ EF YINK  +K  L   T K+ +         L    E ++ ++N
Sbjct: 50  LNYSSITNNLN-KLEEFEYINKNNEKYTLTTST-KMKLVNLLYFNNNLDFIYEYVDFINN 107

Query: 701 LYVGYGVVTITATMPYIN--NIQLTNAE 778
             V    +   AT+PY+N  N QL  A+
Sbjct: 108 HQVENDNIDSLATLPYVNIDNSQLIQAD 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,932,546
Number of Sequences: 1657284
Number of extensions: 14588441
Number of successful extensions: 35702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35693
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)