Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g02
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 29 1.0
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 27 4.0
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 4.0
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 5.4
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 26 7.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.4
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 9.4
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 9.4
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.4
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 587 RTDKLVLAIETE-KLTVETPRMLMKYLRKAQEPIELVDNLYVGYGVV 724
RTD++ L + LTV+ M + + K + I+++D+ +G+G+V
Sbjct: 1481 RTDQISLVKQLSYSLTVQKMGMFVTRMDKLDDGIQILDDFDIGFGLV 1527
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 563 IVEFYINKRTDKLVLAIETEKLTVETPRMLMKYLRKAQEPI-ELVDNL 703
+V+F+ N D V+ +++ ++ R + + RKA PI LV+N+
Sbjct: 189 LVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKASIPILGLVENM 236
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 151 LNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINI--IHSLSGQNEKLSVFDIH 306
L +E+ ++L +F R SLY N +F+N+ IH E L ++ H
Sbjct: 332 LPFEIRVQLTRRLFWDCFMLDRLNSLYCNTQFLNLEDIHVPLPMRETLFMYKAH 385
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 649 HTRCFDRQFFRFNSKH*LICSFINVKLHDFGVQKTLDFHVVQFD-SNIRIGDVQ 491
H R+ F N KH + + I +K H + + D +V FD N+ + DVQ
Sbjct: 112 HESDHSRKHFEKNKKHCVFVNIITLKCHCY----SCDADIVIFDKKNLVVRDVQ 161
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +2
Query: 449 YEPIPDPLYLQKYSLYIANSNITVE-LNDVKVQGLLNAKIVEFYINKRTDKLVLAIETEK 625
++P DP+ +Q+ L+ N I + ++ +++ L K + D+ A+ET
Sbjct: 336 FKPNVDPVKIQQI-LHKQNKIIEEKWISQIRISKNLEVK------QRLLDQERHALETLA 388
Query: 626 LTVETPRMLM-KYLRKAQEPIELVDNL 703
+E R ++ K RKA+E ++ +DNL
Sbjct: 389 KNIENNRFILGKRRRKAREALQKLDNL 415
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 748 VRHSRRYCYYAIADVKIVNQFY 683
+R R YCYYAIA + Q +
Sbjct: 870 LRRLREYCYYAIASFMRLGQAF 891
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 338 SSEHPGSDYDSIRRPCPSFNI-DCIRS 415
SS S++ S+RRP PS ++ D IRS
Sbjct: 475 SSGGLSSNFSSLRRPAPSMHLADSIRS 501
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Frame = -3
Query: 287 SFSFCPLNEWIILIKRS-------FKYNDPSRDLY 204
SF+ P+N+W L F +NDPS DLY
Sbjct: 109 SFTDVPVNKWHSLALEKLEQCCVVFDFNDPSTDLY 143
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 8 IYNVQNKSNNCNFQFVYVYISLYFR 82
+ N QN+ NNC ++ V+ + FR
Sbjct: 40 LLNRQNEGNNCKYKLVFSLYRVSFR 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,096
Number of Sequences: 5004
Number of extensions: 66289
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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