Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5g02
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0733 + 21062790-21063639,21063674-21063721,21065428-210654... 31 1.0
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 30 2.4
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231... 29 5.6
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134... 28 7.4
04_04_0124 + 22929700-22929761,22930192-22930310,22930459-229305... 28 7.4
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 7.4
11_06_0461 + 23856949-23857004,23859814-23859886,23860040-23861398 28 9.7
10_01_0274 - 2901033-2901778,2902475-2902634 28 9.7
>07_03_0733 +
21062790-21063639,21063674-21063721,21065428-21065478,
21065559-21065695,21065781-21065997,21066390-21066627,
21066720-21066870,21066990-21067334
Length = 678
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 148 TLNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINIIHSLSGQNEKLSVFDIHLGQLL 321
TLN+E ++ I K ++Y D S+ + R + + L +N + D LG+LL
Sbjct: 441 TLNWEQRYNIILGIAKGILYLHEDSSIRIIHRDLKANNILLDENMNPKIADFGLGRLL 498
>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 624 FSVSIASTSLSVLLLM*NSTILAFRRPWTFTSFNSTVILELAMYNEYFCRYN 469
F+ S S + + LL M +L +R P FNS+++ L N YF N
Sbjct: 920 FTSSYKSFTFASLLEMVTMRLLYYRAPLILLVFNSSILFPLPYMNLYFVTGN 971
>07_03_0744 +
21121757-21122202,21122316-21122737,21122992-21123117,
21123198-21123319,21123413-21123623,21123955-21124192,
21124284-21124431,21124547-21124879
Length = 681
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 148 TLNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINIIHSLSGQNEKLSVFDIHLGQLL 321
+LN+E ++ I K ++Y D SL + R + + L G++ + + D L +LL
Sbjct: 449 SLNWEQQYNIILGIAKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLL 506
>07_03_0749 +
21212463-21212911,21212976-21213305,21213336-21213436,
21213758-21213883,21213962-21214083,21214177-21214450,
21214767-21215004,21215101-21215248,21215400-21215732
Length = 706
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 151 LNYEL*IRLLTAIFKHVIYKSRDGSLYLNDRFINIIHSLSGQNEKLSVFDIHLGQLL 321
LN+E ++ I K ++Y D SL + R + + L G++ + + D L +LL
Sbjct: 475 LNWEQQYNIILGIAKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLL 531
>04_04_0124 +
22929700-22929761,22930192-22930310,22930459-22930541,
22930640-22930738,22930769-22930786,22931044-22931110,
22931244-22931319,22931450-22931516,22932303-22932520,
22933124-22933191,22933743-22933822,22934362-22934448,
22934524-22934631,22934753-22934848,22935045-22935140,
22936826-22937155
Length = 557
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = +2
Query: 467 PLYLQKYSLYIANSNITVELNDVKVQGLLNAKIVEFYINKRTDKLVLAI----ETEKLTV 634
P Y ++ L I ++ + + + V L++ ++ + LV+ + E L V
Sbjct: 419 PQYTSEFLLIIRHNPLKIMMQSVHPDDLIDKRMRGLNLALAVLVLVVVLLASFSDEVLAV 478
Query: 635 ETPRMLMKYLRKAQEPIELVDNLYVGYGVVTITAT 739
TP + R A P E L G V TAT
Sbjct: 479 RTPAVFAASRRSASPPTERPRELVEGGNAVAATAT 513
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 702 RLSTNSIGSWAFLRYFISIRGVSTVNFS 619
+L N G W FLRYF + + ++ S
Sbjct: 330 KLQANDAGDWEFLRYFTNCTRLQVIDLS 357
>11_06_0461 + 23856949-23857004,23859814-23859886,23860040-23861398
Length = 495
Score = 27.9 bits (59), Expect = 9.7
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 356 SDYDSIRRPCPSFNIDCIRSYFQYHASCVPHYEPIPDPLYLQKYSLYIANSNITVELNDV 535
S Y + R S N+DC S +HA +P I ++ +S A +N + ++ +
Sbjct: 351 SIYRNKFRCLESLNLDCSASDMMFHAGAMPTLVDI--NFTIKAHSTKYACANRNLGIHHL 408
Query: 536 KVQGLLNAKI-VEFYINKRTDKLVLAIETEKLTVETPRMLMKYLR-KAQEPIELVD 697
LN I + K + +V AI+ E + P ++++R +E +E +D
Sbjct: 409 STLKALNVYIDCQGATAKEVEAVVAAIKNEASLL--PNCYIQHIRISREEGLEDID 462
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 404 CIRSYFQYHASCVPHYEPIPDPLY 475
C R + +H +P Y+P P P+Y
Sbjct: 157 CHRRHRMFHRKPMPEYQPPPSPVY 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,609
Number of Sequences: 37544
Number of extensions: 361548
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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