Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5f22
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0175 + 21350528-21351136 31 0.93
09_02_0070 - 3844270-3846228 30 1.2
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 29 3.7
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 29 3.7
06_02_0094 + 11638563-11638892 28 5.0
03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096 28 5.0
11_01_0446 + 3462820-3464265 28 6.5
03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092 28 6.5
12_02_0956 + 24776359-24779085 27 8.7
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 27 8.7
05_03_0478 - 14526180-14526578 27 8.7
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 27 8.7
>09_06_0175 + 21350528-21351136
Length = 202
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 299 RHETSWSPRPGRQVSETDASLRAANNGAVLFLVPAEVKAR 180
RH S RPGR T+ RAA +V+ L+P V AR
Sbjct: 7 RHGCRRSRRPGRNALPTNRPARAAEAPSVVVLLPGGVGAR 46
>09_02_0070 - 3844270-3846228
Length = 652
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 438 ALRSVSIPLPVWSMRALWALPIPGP 512
+LR++S+ LP S RAL+ LP+P P
Sbjct: 51 SLRAISVSLPPPSSRALFPLPLPFP 75
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -2
Query: 535 HRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTEDTVQGTDRTAHR 365
H H+ H K + A DH KG++ K H + +T+ + ++A R
Sbjct: 110 HHHHKRHDRSDKAKLNHAEKDHEDKGVNQAEK-EPSHDGAIEKTDGVTRADSKSAIR 165
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +3
Query: 399 SSVRA-MRALWSMRALRSVSIPLPVW-SMRALWALPIPGPLWSLWSLWSVRTLRTMRPLP 572
SSVR M + + L + P W S++ W G SLW + L T P
Sbjct: 314 SSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP 373
Query: 573 KPVPMPMSKP 602
P P+ + +P
Sbjct: 374 SPFPLRLKRP 383
>06_02_0094 + 11638563-11638892
Length = 109
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 481 RMDHTGKGIDTDRKARMDHKARMARTEDTVQGTDRTA 371
R H G D DR+ R ARM R + QG R A
Sbjct: 20 RRQHPGATRDGDRRQRRGSSARMPRKQQQQQGWGRGA 56
>03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096
Length = 456
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 556 VRKVRTDHRDHRDHKGPGIGKAHKARMD 473
+R+V R H +HKGPG +A AR D
Sbjct: 399 LRRVALYKRGHVEHKGPGAWEAAAARDD 426
>11_01_0446 + 3462820-3464265
Length = 481
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 354 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS---MRALWALPIPGPLWSL 524
+ + +WAV V S+R R + + + V + +WS +RA A+ + PLW +
Sbjct: 96 AFFKVWAVLIVTMQ-DSIRIGRP-YQPKEMTLVDMLTSLWSANQLRAKTAIHLRVPLWLM 153
Query: 525 WSLWSVR 545
WS+ + R
Sbjct: 154 WSIHASR 160
>03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092
Length = 97
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 465 PVWSMRALWALPIPGPLWSLWSLWSVR 545
P WS R+ +A + PL +W LW R
Sbjct: 15 PSWSSRSGFAQKVSAPLEDVWWLWRPR 41
>12_02_0956 + 24776359-24779085
Length = 908
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 556 VRKVRTDHRDHRDHKGPGIGKAHKARMDHTGKGI 455
V ++R +H H D PG G + +D+ G G+
Sbjct: 134 VDRLRVEHYSHLDAAAPGGGAGGRVCLDYCGFGL 167
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 372 AVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALPIPG 509
++ S+P ++ S++ ++ L+ +R LR S+P + + L L + G
Sbjct: 726 SIASLPMSIGSLKNLQILYLIRCLRLHSLPASITQLDDLRCLGLNG 771
>05_03_0478 - 14526180-14526578
Length = 132
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 592 MGMGTGLGKGRMVRKVRTDHRDHRDHKGPGIGKAHKARMDH 470
+G G G R+ R D DHR H G G + + DH
Sbjct: 44 IGSGCVSSGGSWARRQRRDEEDHRQHDGYR-GARRRGQEDH 83
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 66 QNFQVTNRRVNKINVNNGFSSEEGCFDEKCVVLKMHQGASFDFRGHQ 206
QN + + + + N+ + + + ++ K+H GA FD RGHQ
Sbjct: 175 QNGTILKKTLRRGNLEGQHTENQAVVGVR-LIGKLHDGAVFDQRGHQ 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,120
Number of Sequences: 37544
Number of extensions: 255503
Number of successful extensions: 1257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -