Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f18
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    27   0.15 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.6  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   9.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   9.6  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 477 GSQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPA 352
           G+   R M   + +GY   +Y AN PP  K   + LS   P+
Sbjct: 72  GAYPFRPMHQNSYTGYHLGSYAANCPPSPKDDEKCLSLERPS 113


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 545 HHELGILVNQQEPLSLQGNN 486
           H EL  +VN+  PLSL  ++
Sbjct: 324 HEELSAMVNRCHPLSLSSDH 343


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -2

Query: 477 GSQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPALTSS 340
           G   +    PA  S     +      P   PP  T S+G+PA  +S
Sbjct: 4   GGIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVAS 49



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 393 EKPPSRTLSAGTPALTSSAINP 328
           E PP    SA TP  +S   +P
Sbjct: 9   ESPPPAPQSAATPISSSGMTSP 30


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 376 NFICRHTGFN 347
           NF+ RHTGF+
Sbjct: 307 NFLKRHTGFS 316


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 135 VSPKPCKNISDAVCLACAAIITGFGSILQFITGKSI 28
           VS +   ++S  +    A     FG+ L  ITGKSI
Sbjct: 216 VSLRQIGSLSQLLSETVALFNDVFGTCLILITGKSI 251


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 135 VSPKPCKNISDAVCLACAAIITGFGSILQFITGKSI 28
           VS +   ++S  +    A     FG+ L  ITGKSI
Sbjct: 216 VSLRQIGSLSQLLSETVALFNDVFGTCLILITGKSI 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,501
Number of Sequences: 336
Number of extensions: 3689
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)