Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f16
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   163   2e-41
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    29   0.85 
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   3.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.5  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   6.0  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.9  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  163 bits (396), Expect = 2e-41
 Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 1/183 (0%)
 Frame = +2

Query: 155 SHDAYYNYFLNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSST 334
           S  A  N + +LP    K+ A Y+WID    +LRSK   LD +P  ++ +  W++DGSST
Sbjct: 11  SKAAILNKYADLP-QNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSST 68

Query: 335 GQSDLKDSDITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLSKICDQ 514
           GQ+   +SD  L PVA+Y DPFR+  +I+VL   Y+++G P   NHR + A  L K  D+
Sbjct: 69  GQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHADK 128

Query: 515 EPWFGIEQEYTMFDRDHWPLGWPKPRGYPDQDSKNSYCGVGE-HVAGREIAECHARACIY 691
           E WFGIEQEYTM D    P GWPK  G+P       YCGVG   V  R+I E H +AC+Y
Sbjct: 129 ETWFGIEQEYTMLDYYDRPFGWPK-GGFPGPQGP-FYCGVGTGRVFARDIVEAHYKACLY 186

Query: 692 SGM 700
           +G+
Sbjct: 187 AGI 189


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 27/105 (25%), Positives = 40/105 (38%)
 Frame = -2

Query: 657 SLPATCSPTPQ*EFLESWSGYPRGFGHPKGQ*SRSNIVYSCSIPNHGSWSQILLKVIADD 478
           S P    P+    F+ES +G P GF  P  Q   +N     S   H   + I   ++   
Sbjct: 362 SFPLPTMPSEAKGFIESGAGQPLGFNAPSNQEFSANATALVSPGPHSVSTTINTNIVQAT 421

Query: 477 TLWFVGVGKPSLEYVSHKTIICGLLRKGSLYTATGSSVISESFRS 343
                  G  S    +  T     +  GS   ++GSS +S S+ S
Sbjct: 422 ISQSSTSGSSSGSSSASTTASSSSVSSGS-SISSGSSSMSTSYTS 465


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 467 NHRVSSAITLSKICDQEPWFGIEQE 541
           NHRV+S +T +   + +P F IEQ+
Sbjct: 473 NHRVNSNLTANNSLNDKPGFTIEQK 497


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +2

Query: 377  VAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLSKICDQEP 520
            +A+ RD F ++  ++V CET+S++G     N+  +  + L+ + + +P
Sbjct: 1152 MALQRDAFIRA--LVVKCETFSTQGHKDKDNYFQNYQLLLNWLENSDP 1197


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 299 MVPKWSYDGSSTGQSDLKDSDITLLPVAVYRDPF 400
           M P+    GS T  SD+    +TL+ VA+ R PF
Sbjct: 246 MAPERISGGSYTISSDIWSLGLTLMEVALNRFPF 279


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 372  SSVISESFRSDCPVELPSYDHFGTISKSQGSLSNIR 265
            S +  +S R+DC   LP  + FG++       S++R
Sbjct: 1010 SRISMDSMRNDCEAFLPKKEKFGSLRTLHSFESSMR 1045


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 417 ICGLLRKGSLYTATGSSVISESF 349
           IC L + G + TATGSS+ S  +
Sbjct: 705 ICSLTQDGQIATATGSSLQSVGY 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,163
Number of Sequences: 5004
Number of extensions: 72724
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)