Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f15
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.47 
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    29   0.47 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   3.3  

>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -2

Query: 229 RTVAPNPLSRCTWVRRQILPLLLRNPFEIFVFHSFAISLCPRLCSWSFFGIGRVFYENSY 50
           +T +PN  SR +W +     L+L +  + F+     +   P L S + + I   F+ ++Y
Sbjct: 72  KTYSPNLTSRASWNKHFFARLMLDDNVQYFILALSMLIDRPILFSLAPYAIYATFHISTY 131

Query: 49  LINVYL 32
           L +V L
Sbjct: 132 LRSVLL 137


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 577 KRTFLCHTIHNVIACALVIQHSYSSYETDVKV 672
           K TFL   IH VI   ++I  S ++Y  D K+
Sbjct: 186 KATFLTDYIHTVIILVILIMFSLATYSADKKI 217


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +1

Query: 316 LVPDEILLMEKFDTNDLKRFVGVVLMADVSGYTALSERYNNTGKG----GTYRLTVTLNT 483
           L+P  ++L    +T+D + F G+V      G T L++R     +     G Y  T TL  
Sbjct: 302 LIPSMMILKALLETSDKEIFEGIV--GKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQ- 358

Query: 484 YLGSLIELIYAYGGDVLKFSGDAFL 558
           YLGS   ++     D+       FL
Sbjct: 359 YLGSKFRVVLGVAEDLTDVEVGRFL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,493
Number of Sequences: 5004
Number of extensions: 50123
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)