Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f14
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   1.6  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   2.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   2.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   2.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   4.8  
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    25   4.8  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   4.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.3  

>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 11  YVFFFVGLSLLNSFVNYSRFICKQLNIGIICINMQTRWVDQDLTDVEDE 157
           Y     G   + S+V  ++ + K   I II +NM TRWV+  L   E+E
Sbjct: 393 YTLRLSGAMYIGSYVARAKALEKN-TIQII-VNMMTRWVEAYLDQCENE 439


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 215 RYWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDS-DYENRHCIL 352
           + W HIP ++ E +   +    N S +     H   S  Y + HC+L
Sbjct: 126 KQWSHIPGMITENQTNDDAKEVNGSDVDEKSKHLYPSARYGHLHCVL 172


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 77  KQLNIGIICINMQTRWVDQDLTD-VEDEENSTAYKDSFTEKRYR 205
           K L   I+C   +TR ++Q++ D V  +EN T + + F + RY+
Sbjct: 31  KALEESILC---ETRKIEQEIKDQVVQKENKTYFNNKF-DNRYK 70


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 125 VDQDLTDVEDEENSTAYKDSFTEK 196
           VD+D  ++EDEE+    +D F E+
Sbjct: 153 VDEDEEELEDEEDEIGREDGFIEE 176


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 152  DEENSTAYKDSFTEKRYRCLGRYWQHIPTLVLELEKIKENDNENNSGIKIT 304
            +E NST  + S T+++   L      + T   ELEK+++N N++    K T
Sbjct: 1446 EEFNSTKEELSSTQRK---LSEIMDILNTTKEELEKVRQNSNKSEGTSKDT 1493


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 221 WQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSDYENRHCILCV 358
           W+H  T    L  + ++ + N        LH I SD E R C+L V
Sbjct: 82  WRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLV 127


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 240 NVGMCCQYLPKQRYRFSVKESLYAVEF 160
           ++ MC + + K +++  +K+ LYAV F
Sbjct: 260 DLSMCFKCVKKIQFKTKIKDELYAVYF 286


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 137  LTDVEDEENSTAYKDSFTEKRYRCLGRYWQHI 232
            L ++E+E+++T  K +  E R R L   ++HI
Sbjct: 1051 LRELEEEKSNTQRKIAHFESRRRYLTNLYEHI 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,366
Number of Sequences: 5004
Number of extensions: 33371
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)