Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f14
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    29   1.8  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        29   1.8  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    27   4.1  
U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    27   4.1  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    27   4.1  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    26   9.5  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    26   9.5  

>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +2

Query: 20  FFVGLSLLNSFVNYSRFIC-----KQLNIGIICINM---QTRWVDQDLTDVEDEENSTAY 175
           F VG +++N FVN S+F C         IG +C+N    +T+  D  + +++  +  T  
Sbjct: 169 FEVGTNIMNLFVNISKFSCLHGILLHHKIGTLCVNAMEHETKRYDFWIAEMKKTDQETLR 228

Query: 176 K 178
           K
Sbjct: 229 K 229


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +2

Query: 20  FFVGLSLLNSFVNYSRFIC-----KQLNIGIICINM---QTRWVDQDLTDVEDEENSTAY 175
           F VG +++N FVN S+F C         IG +C+N    +T+  D  + +++  +  T  
Sbjct: 169 FEVGTNIMNLFVNISKFSCLHGILLHHKIGTLCVNAMEHETKRYDFWIAEMKKTDQETLR 228

Query: 176 K 178
           K
Sbjct: 229 K 229


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 AYKDSFTEKRYRC--LGR-----YWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSD 328
           A K S  E R++C  LG       W      V + +++K  D EN+S + IT L  +DS 
Sbjct: 21  ATKSSGDEVRFKCEALGTPPLKFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG 80

Query: 329 Y 331
           Y
Sbjct: 81  Y 81


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 AYKDSFTEKRYRC--LGR-----YWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSD 328
           A K S  E R++C  LG       W      V + +++K  D EN+S + IT L  +DS 
Sbjct: 47  ATKSSGDEVRFKCEALGTPPLKFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG 106

Query: 329 Y 331
           Y
Sbjct: 107 Y 107


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 AYKDSFTEKRYRC--LGR-----YWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSD 328
           A K S  E R++C  LG       W      V + +++K  D EN+S + IT L  +DS 
Sbjct: 21  ATKSSGDEVRFKCEALGTPPLKFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG 80

Query: 329 Y 331
           Y
Sbjct: 81  Y 81


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 AYKDSFTEKRYRC--LGR-----YWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSD 328
           A K S  E R++C  LG       W      V + +++K  D EN+S + IT L  +DS 
Sbjct: 47  ATKSSGDEVRFKCEALGTPPLKFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG 106

Query: 329 Y 331
           Y
Sbjct: 107 Y 107


>U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical
           protein C09B9.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 126 THLVCMFIQIIPIFSCL 76
           T+++C+ +QI+P F C+
Sbjct: 167 TNMICLILQIVPFFICI 183


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 AYKDSFTEKRYRC--LGR-----YWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSD 328
           A K S  E R++C  LG       W      V + +++K  D EN+S + IT L  +DS 
Sbjct: 21  ATKSSGDEVRFKCEALGTPPLKFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG 80

Query: 329 Y 331
           Y
Sbjct: 81  Y 81


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 AYKDSFTEKRYRC--LGR-----YWQHIPTLVLELEKIKENDNENNSGIKITVLHSIDSD 328
           A K S  E R++C  LG       W      V + +++K  D EN+S + IT L  +DS 
Sbjct: 47  ATKSSGDEVRFKCEALGTPPLKFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG 106

Query: 329 Y 331
           Y
Sbjct: 107 Y 107


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 311 VILLFLYPSCFHYHFL 264
           V +LFLYP CF ++F+
Sbjct: 159 VPILFLYPICFTFYFI 174


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 160 FFIFHIC*ILVHPSCL 113
           +FIFH C I+  PSCL
Sbjct: 422 YFIFHKCLIISWPSCL 437


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 8   NYVFFFVGLSLLNSFVNYSRFICKQLNI 91
           NY F F+ LS+    V++SRFI  Q N+
Sbjct: 53  NY-FLFIDLSISTVIVSFSRFIKFQTNL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,332
Number of Sequences: 27780
Number of extensions: 186714
Number of successful extensions: 465
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)