Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f13
         (474 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8U5W7 Cluster: AGR_pAT_154p; n=1; Agrobacterium tumefa...    35   1.1  
UniRef50_Q6FUF4 Cluster: Similar to sp|Q03656 Saccharomyces cere...    32   7.4  

>UniRef50_Q8U5W7 Cluster: AGR_pAT_154p; n=1; Agrobacterium
           tumefaciens str. C58|Rep: AGR_pAT_154p - Agrobacterium
           tumefaciens (strain C58 / ATCC 33970)
          Length = 431

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 221 GRHQYFGLQPPGQRGGRHDDFFLQARALATCSNRQSKIHKRLFFF 87
           GR  Y GL+PP  R    D+   +   L  CSN++   H   FFF
Sbjct: 311 GRRLYVGLEPPEARRLIKDEALPETAGLFPCSNQEGTGHLARFFF 355


>UniRef50_Q6FUF4 Cluster: Similar to sp|Q03656 Saccharomyces
           cerevisiae YMR216c SKY1; n=2; Saccharomycetales|Rep:
           Similar to sp|Q03656 Saccharomyces cerevisiae YMR216c
           SKY1 - Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 708

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 9   VKNPSKCS*FYWNNKIIVCQKFPFNHEEKQSFVDFALPVTT 131
           ++N SK    +W  K ++ +K+ F+ EE Q   DF LP+ T
Sbjct: 616 LRNISKLK--FWPLKDVLREKYKFDKEEAQEIADFLLPMLT 654


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,619,334
Number of Sequences: 1657284
Number of extensions: 5730341
Number of successful extensions: 13227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13210
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)