Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f13
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366...    27   7.7  
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312...    27   7.7  
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819...    27   7.7  

>09_02_0053 -
           3665202-3665900,3666109-3666359,3666612-3666938,
           3667017-3667242,3667328-3667846,3668789-3668863,
           3668963-3669052,3669142-3669222,3672176-3672222,
           3672620-3672685,3673834-3673930,3673983-3674046,
           3674160-3674278,3674448-3674563,3676675-3676708
          Length = 936

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 378 YRVEFSVVIICPVLHNRLYHQEADDI 301
           Y+V+  +VI C VLHN +     D+I
Sbjct: 587 YKVQVKIVIACCVLHNWILDNGPDNI 612


>08_02_0911 +
           22530370-22530497,22531083-22531126,22531224-22531267,
           22531428-22531946,22532032-22532257,22532336-22532662,
           22532915-22533165,22533374-22534072
          Length = 745

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 378 YRVEFSVVIICPVLHNRLYHQEADDI 301
           Y+V+  +VI C VLHN +     D+I
Sbjct: 396 YKVQVKIVIACCVLHNWILDNGPDNI 421


>07_01_0973 -
           8193002-8193261,8193388-8193485,8194117-8194401,
           8195559-8195773,8196549-8197058
          Length = 455

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 89  RKTIVCGFCFACYYKLP 139
           RK  +C +CF  YYK P
Sbjct: 319 RKFAICMYCFYAYYKCP 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,919,575
Number of Sequences: 37544
Number of extensions: 158702
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)