Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f13
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   8.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   8.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 238 HRLRVEDAINISACNPRDNAEAD 170
           H++RV     I  CN R N + D
Sbjct: 461 HKIRVPPGTPIYECNKRCNCDID 483


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 472 FFLHLFVSFNTFYKYY 425
           F+L LFV   T+YK Y
Sbjct: 215 FYLPLFVMVFTYYKIY 230


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  EEKQSFVDFALPVTTSCQR 143
           +EK++ +DF + VT  C +
Sbjct: 517 KEKENEIDFKIEVTEDCNK 535


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 39 YWNNKIIVCQKFPFNHEE 92
          YWN    +C K+    EE
Sbjct: 46 YWNVPTFMCHKYGLRFEE 63


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 131 CSNRQSKIHKRLFFFMIKRK 72
           CS +Q KI  ++  F+I  K
Sbjct: 78  CSEKQKKIADKVVQFLIDNK 97


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 292 FLQQLTSIVLNNSH 251
           FLQ+L+S V +N+H
Sbjct: 932 FLQELSSWVSDNAH 945


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 131 CSNRQSKIHKRLFFFMIKRK 72
           CS +Q KI  ++  F+I  K
Sbjct: 78  CSEKQKKIADKVVQFLIDNK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,615
Number of Sequences: 438
Number of extensions: 2094
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)