Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f09
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   0.95 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   6.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    23   6.7  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    23   6.7  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    23   8.8  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    23   8.8  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 237 GIFVLTFTNVKNKNR-WSHSQLTIEFTKYT*SLSY 136
           G  +L+F+NVKN NR ++H  L+  F  +T  + Y
Sbjct: 124 GFDILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIY 158


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 689

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 61 VLEGNNCCNHNVH 23
          V+  NNCCN   H
Sbjct: 49 VIVSNNCCNRRFH 61


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 76  RDRHVVLEGNNCCNHNVHD 20
           R +H +LE + CC  NV D
Sbjct: 547 RIQHDILENHFCCLKNVKD 565


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 61  LHDDHDHSVKSDTTEKKKXF 120
           L+DD D  ++S  T KKK +
Sbjct: 67  LYDDLDKDLQSSETRKKKHY 86


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 208 YVRKCQNKYS*NYLKI 255
           +V +CQ+KY  N +KI
Sbjct: 103 FVNECQSKYRLNIIKI 118


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 76  RDRHVVLEGNNC 41
           +D +V+LEGN C
Sbjct: 638 KDENVILEGNGC 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,895
Number of Sequences: 5004
Number of extensions: 12839
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)