Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f09
         (262 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0739 + 35886694-35886935,35887102-35887123                       28   0.90 
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    28   1.2  

>03_06_0739 + 35886694-35886935,35887102-35887123
          Length = 87

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   TVEVNREHYDYNNYYLPTLHDDHDHS 84
           T +  R HYD+  + + T+ DDH H+
Sbjct: 40  TADDVRRHYDHLQHDVTTIDDDHSHA 65


>04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,
            1848780-1848887,1849001-1849204,1849294-1849525,
            1849602-1849751,1849830-1850007,1850416-1850519,
            1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 190  PSIFVLYVRKCQNKYS*NYLKIL 258
            P +  + +R+C N+YS N++KIL
Sbjct: 941  PDLSKVQLRECDNEYSRNFMKIL 963


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,267,569
Number of Sequences: 37544
Number of extensions: 67321
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)