Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f06
         (477 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   1.9  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.3  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    22   3.3  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   5.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   5.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   5.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   5.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   5.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   5.8  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   5.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   5.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   5.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   5.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +1

Query: 22  SHSVRKPIIKPLILKMEAGGQKIYQVIKYKLQNPDTLK--TFNYLRTFHADLPSCTTRRR 195
           S S   P I P + ++  G   +    + K Q     +  T    + FH +    T RRR
Sbjct: 192 SQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRR 250

Query: 196 KELAISLCL 222
            E+A +LCL
Sbjct: 251 IEIAHALCL 259


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 133 KTFNYLRTFHADLPSCTTRRRKELAISLCL 222
           +T    + FH +    T RRR E+A +LCL
Sbjct: 234 QTLELEKEFHTN-HYLTRRRRIEMAHALCL 262


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 133 KTFNYLRTFHADLPSCTTRRRKELAISLCL 222
           +T    + FH +    T RRR E+A +LCL
Sbjct: 16  QTLELEKEFHTN-HYLTRRRRIEMAHALCL 44


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 32  TRRRRIEIAHALCL 45


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 246 TRRRRIEIAHALCL 259


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 268 TRRRRIEIAHALCL 281


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 249 INFWFCSFY-YYSDIMNLNKRYACYFYSF 332
           ++F  C++Y YY+ I+ L   Y  ++Y+F
Sbjct: 94  VHFLLCTYYFYYAFIILLCVYY--FYYAF 120


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 246 TRRRRIEIAHALCL 259


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 246 TRRRRIEIAHALCL 259


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 202 TRRRRIEIAHALCL 215


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 246 TRRRRIEIAHALCL 259


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 34  TRRRRIEIAHALCL 47


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 270 TRRRRIEIAHALCL 283


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 246 TRRRRIEIAHALCL 259


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 183 TRRRRIEIAHALCL 196


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 181 TTRRRKELAISLCL 222
           T RRR E+A +LCL
Sbjct: 242 TRRRRIEIAHALCL 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,063
Number of Sequences: 336
Number of extensions: 2172
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)