Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f06
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    25   4.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.9  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   5.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.9  

>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 269 TAEPKIYKSFVPNTKTRQRLMASSFRRLVVQLGKS 165
           +AEP I ++    T++ Q +++   R  VV+LGKS
Sbjct: 280 SAEPLIPRNCTDVTESAQEVLSKLGRSRVVKLGKS 314


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 238 YLTQKQGRD*WRVPSAVWSYN 176
           Y  Q  G D W+V S +W+ N
Sbjct: 444 YTRQNAGYDFWQVHSTIWANN 464


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +1

Query: 25  HSVRKPIIKPLILKMEAGGQKIYQVIKYKLQNPDTLKT 138
           +S  + I+K +   +EA  +K+++ ++ +L +P T +T
Sbjct: 195 YSSFEEIVKKMSRYIEAAFEKLFRCVQTELSDPQTAQT 232


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 60  FKNGSGRSKNISSNKI*IAK-SRHSQNVQLPKNV 158
           F  GSGRSKN+ +    ++K S++  N+ + +N+
Sbjct: 203 FSTGSGRSKNVLNKLDDLSKRSKNYPNLVIDRNL 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,947
Number of Sequences: 5004
Number of extensions: 32753
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)