Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5f06
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    29   1.5  
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353...    27   5.9  
06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596     27   5.9  

>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 151 RTFHADLPSCTTRRRKELAISLCLVFVLGTKLL*IFGSAVFII 279
           R FH    S    +R+  A+ L L+ VL +  L IF SAV I+
Sbjct: 596 RKFHHGSTSEDEYKRRFAAVRLILLVVLSSSTLVIFNSAVLIV 638


>11_06_0295 +
           22033367-22034947,22035030-22035137,22035230-22035370,
           22035576-22035625,22036100-22036168,22036649-22036781,
           22037634-22037747,22037826-22038038,22038387-22038500,
           22038768-22038900,22039304-22039416,22040204-22040284,
           22040397-22040483
          Length = 978

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 21/75 (28%), Positives = 28/75 (37%)
 Frame = -1

Query: 474 FFS*LIFNTMNSXXXXXXXXXXXXXXXXXXLHNKRCRQSEFFVTVYFEMNKNNMHTVYSS 295
           FF  LI  TM +                   HN  C  S+ F  ++    KN+ H  Y S
Sbjct: 725 FFLHLIIQTMWNLRPFRDDFLKRPPASFQLRHNGSCF-SDIFYDIFSAWEKNDHHETYYS 783

Query: 294 SLYQNNNKNCRTKNL 250
                NN  C+T N+
Sbjct: 784 LTSLKNNL-CQTVNV 797


>06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596
          Length = 196

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 263 EPKIYKSFVPNTKTRQRLMASSFRRLVVQLGKSA 162
           +P+IYK FV     R  +   S R ++VQ G  A
Sbjct: 80  QPQIYKPFVRKCVMRGNVETGSVREIIVQSGLPA 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,270
Number of Sequences: 37544
Number of extensions: 168785
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)