Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e17
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    28   1.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   3.3  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.3  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    26   5.7  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   7.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.5  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   7.5  
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   9.9  

>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 320 LYNCSMFFSLKSGLRQASIHNWHLASRGNYEIL 222
           L +CS  FSL++ L  A     H+AS G  E+L
Sbjct: 162 LRDCSGNFSLQNALEMARASLSHIASHGTREVL 194


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +1

Query: 478 SRGGQNHIAVTSVDVSLMTSTSGHTSQT----KKTMTDYTPRKIKLQKGLNKCAKNLMDA 645
           SRGG +HI+  +V +S+ T      S +     + +    P  +   + + KCA N    
Sbjct: 702 SRGGLSHISSRNVSISVPTVLQDVFSDSPLVLSRKLRGKIPENVSSSELIKKCASNPFGK 761

Query: 646 DV 651
           D+
Sbjct: 762 DL 763


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 517 LLKLLQYGFDHPCCANSLKSLFLELLFVYSWGLLK 413
           L + +QYGF HP   + ++      +FV++W +L+
Sbjct: 162 LSQTIQYGFTHPIPQHQVRD-----MFVWNWNMLR 191


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 38  YRPPPCQIPTVP 3
           YRPPP + PTVP
Sbjct: 105 YRPPPTEPPTVP 116


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 364 SYTSIFQNVSCIYTYYIIVQCFFLSSQVFDKRLSITGTSHH 242
           S T +F+ +S  Y YY     +FLS      R  +    H+
Sbjct: 440 SITEVFEQMSKKYGYYTTQNSYFLSRDTPKLRALVDALRHY 480


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 505  LQYGFDHPCCAN 470
            ++Y +D+PCCAN
Sbjct: 2405 VKYSWDYPCCAN 2416


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 499 YGFDHPCCANSLKSLFLELLFVYSWGLLKYMV 404
           Y FD P C+NS++ +  +   +Y W    Y++
Sbjct: 126 YDFDIPNCSNSIRVIDGKAEGMYGWLATNYLL 157


>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 374 NFFFIYVHLSKCKLHIYILYNCSMFFSLKSGLRQASIHNW 255
           + FFI + +S    H+ +LY+ ++ +S++  +  +S  N+
Sbjct: 6   SLFFIQIVISIFNSHLAVLYSIALCYSVQGRILGSSTTNF 45


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 357 VYEKKVKKCCYSHVKLTMYFNK 422
           +Y+ K +KC  + V LT YFN+
Sbjct: 352 IYKIKFQKCDMNIVMLTKYFNE 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,124
Number of Sequences: 5004
Number of extensions: 63601
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)