Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5e17
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 34 0.090
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 31 0.84
02_05_0114 + 25958834-25961296 31 0.84
04_01_0192 - 2245794-2246186,2246699-2247490 29 2.6
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 29 3.4
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849... 29 3.4
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 29 4.5
07_01_1115 - 10297763-10298103,10298396-10298441,10299077-102991... 28 7.8
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 28 7.8
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 350 LSKCKLHIYILYNCSMF-FSLKSGLRQASIHNWHLASRGNYEILNPCCILLLNHVRTQNK 174
LS K + +L NC M LK L Q + N H+ + +YE+ +LL+ + K
Sbjct: 1324 LSSLKYMLNVLKNCGMSDVLLKDALSQIYL-NPHIWAYASYEVQRELYLLLIQYFECDGK 1382
Query: 173 CAPL 162
C P+
Sbjct: 1383 CLPM 1386
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -2
Query: 436 VYSWGLLKYMVSLTWE*QHFLTFFSYTSIFQNVSCIYTYYIIVQCFFLSSQVFDKRLSI 260
V++W LL ++ T E + L ++ FQ +YT+ I+ + F + +V D+ L +
Sbjct: 307 VWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKV-DEALQV 364
>02_05_0114 + 25958834-25961296
Length = 820
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -2
Query: 436 VYSWGLLKYMVSLTWE*QHFLTFFSYTSIFQNVSCIYTYYIIVQCFFLSSQVFDKRLSI 260
V++W LL ++ T E + L ++ FQ +YT+ I+ + F + +V D+ L +
Sbjct: 189 VWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKV-DEALQV 246
>04_01_0192 - 2245794-2246186,2246699-2247490
Length = 394
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 361 MKKKLKNAAIPMLNLPCTSINPRSTQREAPKTEILRNLHSRGGQNHIAVT 510
+KK L AIPM NLP S+ P + P + R + R G +AVT
Sbjct: 319 LKKHLGKRAIPMPNLP--SVGPEGQIKTQPTAVLQRRMMPRNG---VAVT 363
>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 430 STQREAPKTEILRNLHSRGGQNHIAVTSVDVSLMTSTSGHTSQTKKTMTDYTPRKI 597
S+ ++A + +L +LH GQN VTS S T + TD T KI
Sbjct: 967 SSHKDADDSSMLIDLHDENGQNLHTVTSSQQSKHTGDEHQKLILGEESTDVTANKI 1022
>01_02_0086 -
10979236-10979396,10980288-10980798,10984446-10984977,
10984983-10985002
Length = 407
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 143 SLFAFIIMVHICSVY-GRGSTAKYNKDLRFHNFPVMRGASYG 265
+L A II + C V +G +KY + FH P+ G S+G
Sbjct: 337 NLVALIITIIFCLVILWQGVFSKYGAGIIFHGSPISSGRSHG 378
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 508 TSVDVSLMTSTSGHTSQTKKTMTDYTPRKIKLQKGLNKCAKNLMDADVT 654
+ +V L T +GHT T KTM P I L+ K A MD D +
Sbjct: 54 SQTEVDLHTKRTGHTEFTDKTMEAAKP--IDLEAAPPKPAGEAMDVDAS 100
>07_01_1115 -
10297763-10298103,10298396-10298441,10299077-10299101,
10299663-10299718,10299818-10299925
Length = 191
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 603 KFYFSWCIICHCFFSLRCMATSRCHK 526
K +FS I+C CF L RCHK
Sbjct: 165 KHFFSLQILCKCFDMLSGAFGGRCHK 190
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +3
Query: 366 KKVKKCCYSHVKLTMYFNKPQEYTKRSSKNRDFKEFAQQGWSKPYC 503
+K++K C+S +++ +KP+E K+ ++ KE ++ W K YC
Sbjct: 55 RKLRKKCFSACIVSVEDDKPKEEEKK-DPCKEAKEKLEKAW-KEYC 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,198,457
Number of Sequences: 37544
Number of extensions: 392396
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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