Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e17
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    32   0.32 
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    31   0.75 
AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical...    29   3.0  
Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical p...    29   4.0  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    29   4.0  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    29   4.0  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    29   4.0  
AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effe...    29   4.0  
AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical ...    28   6.9  
U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
            protein Y46G5A.6 protein.
          Length = 1002

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 449  GASLCVLLGFIEVHGKFNMGIAAFFNFFFIY--VHLSKCKLHIY 324
            G   C+++  I + G ++ GI  F NFFF +  +H  K  L I+
Sbjct: 912  GVGFCLVVFIIVIIGVYSFGILLFLNFFFHFENMHFFKFSLQIW 955


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 32/136 (23%), Positives = 54/136 (39%)
 Frame = +1

Query: 238 PRDARCQLWIDACRRPDLREKNIEQLYNMYICSLHFERWTYMKKKLKNAAIPMLNLPCTS 417
           P   RC    D     D  E+N ++  ++Y C  H E  +  +KK K + +P L +  T+
Sbjct: 139 PSSKRCDGLKDCSDGSD--EENCKECQSIYSCRAHIEEES--EKKDKTSVLPTL-ICLTA 193

Query: 418 INPRSTQREAPKTEILRNLHSRGGQNHIAVTSVDVSLMTSTSGHTSQTKKTMTDYTPRKI 597
               +     P      +  S+  ++    +  D  L  S         +  +D +    
Sbjct: 194 EKLCNGVENCPDGSDEASCRSKCSKDQFKCSGSDACLPISVKCDGVSDCENESDESNCN- 252

Query: 598 KLQKGLNKCAKNLMDA 645
           K QKG +KC KN + A
Sbjct: 253 KCQKGAHKCGKNCIKA 268


>AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical
           protein K09C6.1 protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 451 KTEILRNLHSRGGQNHIAVTSVDVSLMTSTSGHTSQTKKTMTDYTPRKIKLQKGLNKCAK 630
           K E++  L   G     + TS    L+ S      ++ K  +   P  ++LQK LNK  K
Sbjct: 36  KYEMMEELDPDGPPESSSSTSNQFWLVQSIRSGCMRSAKLASQKNPEHLQLQKDLNKQRK 95

Query: 631 NLMD 642
            L D
Sbjct: 96  LLFD 99


>Z83120-9|CAB05589.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 329 IYILYNCSMFFSLKSGLRQASIHNWHLASRGNYEILNPCC 210
           IY  Y CS  F++++G    S    +LA   N++  NP C
Sbjct: 666 IYDRYQCSYIFNIETGGAIDSYKIGNLARFANHDSKNPTC 705


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 473 KFLKISVFGASLCVLLGFIEVHGKFNMGIAAFFNFFFIYVHLSKCKL 333
           +F+   +FGA + + L F+ V   F+  +A   NFFF Y+ L    L
Sbjct: 52  RFILDVMFGAMVTIYLTFVVVFAVFHEELAPLQNFFF-YLGLPSSNL 97


>Z81515-11|CAB04199.2|  773|Caenorhabditis elegans Hypothetical
           protein R06A4.7 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 329 IYILYNCSMFFSLKSGLRQASIHNWHLASRGNYEILNPCC 210
           IY  Y CS  F++++G    S    +LA   N++  NP C
Sbjct: 666 IYDRYQCSYIFNIETGGAIDSYKIGNLARFANHDSKNPTC 705


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 377 FNFFFIYVHLSKCKLHIYILYNCSMFF 297
           F FF +  H+  C +HIY L  CS++F
Sbjct: 146 FEFFLLINHILSCVIHIYEL--CSIWF 170


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 377 FNFFFIYVHLSKCKLHIYILYNCSMFF 297
           F FF +  H+  C +HIY L  CS++F
Sbjct: 124 FEFFLLINHILSCVIHIYEL--CSIWF 148


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 377 FNFFFIYVHLSKCKLHIYILYNCSMFF 297
           F FF +  H+  C +HIY L  CS++F
Sbjct: 146 FEFFLLINHILSCVIHIYEL--CSIWF 170


>AF011893-1|AAC27124.1|  773|Caenorhabditis elegans maternal-effect
           sterile 2 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 329 IYILYNCSMFFSLKSGLRQASIHNWHLASRGNYEILNPCC 210
           IY  Y CS  F++++G    S    +LA   N++  NP C
Sbjct: 666 IYDRYQCSYIFNIETGGAIDSYKIGNLARFANHDSKNPTC 705


>AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical
           protein C09E7.9 protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 391 PMLNLPCTSINPRSTQREAPKTEILRNLHSRGGQNHIAVTSVDVSLMTST 540
           P+ +   +S NPRST  E      + +  SRG   H + ++V    +T T
Sbjct: 653 PLTSSSSSSANPRSTHIEGSSISTMPSTSSRGNVQHHSGSAVRGQSITPT 702


>U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical
           protein C06G1.1 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 47  RIPYRPPPCQIPT 9
           R+PYR PP Q+PT
Sbjct: 269 RLPYRSPPLQVPT 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,679
Number of Sequences: 27780
Number of extensions: 372740
Number of successful extensions: 1080
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)