Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e17
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 364 KKKLKNAAIPMLNLPCTSINPRSTQRE 444
           KKK K +  P  N     I P++TQR+
Sbjct: 541 KKKTKQSLSPSENQSKMEILPKTTQRQ 567


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 35  DTEYGCGPPSHDRTYFALLNTND 103
           DTE   G   ++ TYF L + ND
Sbjct: 371 DTEILIGNNENEGTYFILYDFND 393


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 35  DTEYGCGPPSHDRTYFALLNTND 103
           DTE   G   ++ TYF L + ND
Sbjct: 371 DTEILIGNNENEGTYFILYDFND 393


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 557 CDVWPLVDVIRDTST 513
           CDVW  +DV+  T++
Sbjct: 119 CDVWRSLDVLFSTAS 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,853
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)