Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5e15
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905... 46 2e-05
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379 30 0.88
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 29 1.5
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 29 2.0
09_04_0444 - 17649685-17650524 28 3.5
08_02_1019 - 23657175-23658047 28 3.5
04_04_0070 - 22509546-22509686,22509799-22509953,22510167-22510260 28 3.5
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 28 4.7
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 28 4.7
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128... 27 6.2
07_03_0534 - 19189986-19190126,19191058-19191212,19191643-191919... 27 6.2
03_01_0639 - 4678993-4679034,4679880-4679945,4680040-4680150,468... 27 6.2
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 27 6.2
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 27 6.2
>01_06_0159 +
27089006-27089064,27089925-27090007,27090414-27090588,
27091442-27091592,27091629-27091752,27092378-27092446,
27093197-27093291
Length = 251
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +2
Query: 104 LKPLLE-SGWKIQSNRDAIE--KEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNV-YNK 271
+K L++ GW++ + D ++ + ++ KNF + F+ VA +AE+ HHP+ V +N
Sbjct: 151 VKSLIKVGGWELATEGDILKLHRAWKVKNFVKGLEFLQLVAAVAEEEGHHPDLHLVGWNN 210
Query: 272 LQVTLSSHDVNGLSKRDIKMAS 337
+++ + +H V GL+ D +A+
Sbjct: 211 VKIDVWTHSVRGLTDNDFILAA 232
>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
Length = 881
Score = 30.3 bits (65), Expect = 0.88
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = +2
Query: 83 QEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNV 262
Q+ + LK L S ++ + + K + +LLA K D +W V
Sbjct: 343 QDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKCHGFPLAIICLASLLASKSDTKDQWEQV 402
Query: 263 YNKLQVTLSSHDVNGLSKRDIKMASFMDKNYN 358
+N L SS G+S DI + S+ D Y+
Sbjct: 403 HNSLSSAFSS---QGMS--DILLLSYYDLPYH 429
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 215 ALLAEKMDHHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMDKNY 355
+LL+ K D +W V+N + VTL+S DV R I M S+ D Y
Sbjct: 373 SLLSIKPDTEDQWMQVHNSIGVTLNS-DV---EVRKILMLSYYDLPY 415
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +2
Query: 80 NQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFN 259
+Q+ +K + SG + + + K + LLA K D EW
Sbjct: 272 HQDSSKLFVKKIFPSGCGVPQHLKEVSNAILKKCGGLPLAILIIAGLLASKYDRKDEWEA 331
Query: 260 VYNKLQVTL-SSHDVNGLSKRDIKMASFMD 346
V+N + L +H + G R I M SF D
Sbjct: 332 VHNSIGSELGKNHTLEGF--RRILMLSFYD 359
>09_04_0444 - 17649685-17650524
Length = 279
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 29 ASVSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEF 169
A S + K++ K QE++ L GW+IQ + +A ++F
Sbjct: 206 AGPSGSGSGKKRFRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQF 252
>08_02_1019 - 23657175-23658047
Length = 290
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 29 ASVSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEF 169
A S + K++ K QE++ L GW+IQ + +A ++F
Sbjct: 217 AGPSGSGSGKKRFRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVQQF 263
>04_04_0070 - 22509546-22509686,22509799-22509953,22510167-22510260
Length = 129
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 KLNQEERTTELKPLLESG-WKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 238
K+ + T EL L G WK+ +N++ ++ +FK+ A +T AL + D
Sbjct: 63 KVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKD 118
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 56 KRKMADKLNQEERTTELKPLLESGWK 133
+R A+KL E+R + + + ESGWK
Sbjct: 779 ERANAEKLRLEQRQRQARKMQESGWK 804
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 32 SVSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFK 178
++ +T K K+ADKL EE+ + L E+ + N+ A ++E++ K
Sbjct: 577 NMKNTVGDKDKLADKLESEEKEKVEEALKEALEWLDENQTAEKEEYEEK 625
>11_06_0062 +
19709801-19710832,19712383-19712568,19712661-19712867,
19712940-19713078,19713172-19713380,19713520-19714134
Length = 795
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 53 SKRKMADKLNQ-EERTTELKPLLESGWKIQSNRDAIEKEFQFK 178
SK ++ D E+ T L L+E+G+ +QS + + K QFK
Sbjct: 654 SKLRITDSTKIFEKHNTTLNYLVENGFNVQSLQCKLNKALQFK 696
>07_03_0534 -
19189986-19190126,19191058-19191212,19191643-19191928,
19192641-19192892,19193839-19193877
Length = 290
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 89 ERTTELKPLLESG-WKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 238
+ T+ L G WK+ SN++A+++ FK+ A +T A+ + D
Sbjct: 229 DENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKD 279
>03_01_0639 -
4678993-4679034,4679880-4679945,4680040-4680150,
4680266-4680304,4680394-4680493,4680597-4680712,
4680897-4681035,4681151-4681222,4681331-4681434,
4681616-4681867
Length = 346
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +3
Query: 9 ALPPSVTPVCPRHHRVKGKWLINLIKRSAQLSSNLYWNL 125
+LP + T +C V GKW+++ + ++ +++S+L +NL
Sbjct: 305 SLPSACTVLCALTLPV-GKWVVDYVLKNHEVTSDLTYNL 342
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 203 MTRVALLAEKMDHHPEWFNVYNKLQVTL-SSHDVNGLSK 316
+T +LLA K + EW+ VYN + L +S DV + K
Sbjct: 324 ITMASLLACKARNKMEWYKVYNSVGTGLENSLDVKNMRK 362
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 8 SLAAVRYASVSSTSPSKR--KMADKLNQEERTTELKPLLESGWKIQS 142
+L A+R S S KR ADK ++ R+T KPL ES + QS
Sbjct: 560 NLNAMRMKSNLSKRERKRGSNSADKPKKKGRSTAFKPLTESSGRKQS 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,685
Number of Sequences: 37544
Number of extensions: 212867
Number of successful extensions: 507
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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