Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e14
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    30   0.27 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   3.3  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   4.3  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   7.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   10.0 
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   10.0 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   10.0 

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 121 WYSLSSVLTPLIDAWQMLKNIGWFSSLN-LKFN 26
           W S S + T + DAW   +NI +F S N LKF+
Sbjct: 487 WVSDSIIETSIYDAWIQFRNIPYFPSSNSLKFS 519


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 163 DYSYIRRNVPSREGWYSLSSVLTPLIDAW 77
           D SY+ + V  + G YSL + +  L+ +W
Sbjct: 149 DLSYVSKEVKQKTGQYSLFAYIFSLVISW 177


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 672 EQGHSVEMSGVTILMFASECLKTMFFSS---HPHLPHSFERLTASLVTLKPFPRALEEDK 502
           E    + + G T    A   ++T+  +      HLP   E LT + VTLK  P +L+  K
Sbjct: 240 ELASKLVLDGKTDYPAACNAIETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299

Query: 501 D 499
           D
Sbjct: 300 D 300


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 353 GSGPTDLCLCSVLGPRDDERASLKSSLKKAFGFGSRDKAKGNTGKDIE 496
           G G  D+C+  + G     R+ +  +LK A        A+G  G+ +E
Sbjct: 245 GDGANDVCMFELAGYSVAIRSGMPVALKAAKAISDVSSAEGAVGEVLE 292


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 612 LKTMFFSSHPHLPHSFERLTASLVTL 535
           L T+F +   +L HSFERL   L+ L
Sbjct: 673 LITIFSNDQANLRHSFERLQEILILL 698


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   IIDLSTKLNFKFSEENHPIFLSICH 80
           I+D S KLNF   + + P+ + +C+
Sbjct: 422 ILDFSEKLNFATEKWSAPLEIDVCY 446


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 214 EIPTSLTFVFALTPSGEDYSYIRRNVPSREGWYSLSSVL 98
           ++  SL   +   PS ED++ I +N  S   W    SVL
Sbjct: 322 QVKKSLILCYVQCPSIEDFNKIWKNQASMNEWDWAESVL 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,073
Number of Sequences: 5004
Number of extensions: 50104
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)