Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e14
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.1  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   8.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.1  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 438 RHSVSVLAIKPKEIQERILNHLCLLPAHVEKASKLQERQLNVQKNVVNAGVTRK 599
           RH+V  LA    ++++ +   LC     V   ++   R+  +     N  +TRK
Sbjct: 59  RHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQITRK 112


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 202 SLTFVFALTPSGEDYSYIRRN--VPSREGWYSL 110
           + T+  AL+P G+  +YI +N  V  ++ W  L
Sbjct: 475 NFTYSLALSPDGQFGNYIIKNNSVGGKKEWTGL 507


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 190 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 228


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 190 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 228


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 201 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 239


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 201 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 239


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 201 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 239


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 201 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 239


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +2

Query: 464 KAKGNTGKDIEXXXXXXXARGKGFKVTREAVKRSKECGK 580
           K  GN  K          +R  GF+ T     R + C +
Sbjct: 201 KKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,430
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)