Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5e13
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.1  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    28   1.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.0  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    27   2.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   3.5  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    26   6.0  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    26   6.0  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   6.0  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    25   8.0  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   8.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   8.0  

>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -1

Query: 563 GFCLDIFVSPCCRSGEGLDLAVSEFLLDCFKS----STESAPINGVILFVVPSCF 411
           G C D   +P      GL L + E L+DCF +    +TE   IN +    +PS F
Sbjct: 134 GLCYDS-CTPLANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIP--TLPSVF 185


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 397  KSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKPVQPV 576
            K +      TT+ +T    + ++    +S  NSE+A +S + +R    T + +  PV+ V
Sbjct: 980  KPESSLSSSTTSGLTS--SSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTV 1037

Query: 577  L 579
            +
Sbjct: 1038 V 1038


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 448 IGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKP-VQPVLKKSPLDMKLMEAMSL 624
           I  + VE L QSN N +++K +   E  HG+ ++    P   P   + P  +      S 
Sbjct: 319 ITMVGVEPLYQSNGNEKSSKYNVFSESAHGNHQVLSFSPGSSPSFIEQPSPISPTSTTSE 378

Query: 625 DEFAITEKVD 654
           D   + E  D
Sbjct: 379 DTNTLEEDTD 388


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 391 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQK-PV 567
           ++ +KGE +     K +         DLK SN + ET+ S  S   +   ++ +K + P 
Sbjct: 107 RKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKGSVNNKSERSREAKSRMPK 166

Query: 568 QPVLKKSPLDMKLMEAMS 621
                K  LD+  ++  S
Sbjct: 167 NSKEIKKGLDLSKLDMTS 184


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 391 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQ-SNKNSETAKSSPSPERQHGDTKISKQK-P 564
           +QK K  K+D   N+ TP   +  +E      +K+ +++K  P    + G  KI ++   
Sbjct: 49  RQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHK 108

Query: 565 VQPVLKKSPLDMKLM 609
           V+ V  KSP   KL+
Sbjct: 109 VKKV--KSPKKEKLV 121


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 545 KYLNKNLFSLFSK 583
           KYLN NLF+LFSK
Sbjct: 624 KYLNPNLFALFSK 636


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 304 ICHDCLQQVSTLHLYAVKVEKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQS 483
           + + C     T  +  +  +KT  F +F+K   K ++++G   K+   + + + + L  S
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSLVKEDEENGIEKKINEAMNSSASQPLPNS 197

Query: 484 -NKNSETAKSSP 516
            N  S T  S P
Sbjct: 198 TNFASTTFPSVP 209


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 448  IGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKPVQPVLKKSPLDM 600
            +G L  E  + ++ N +  ++S  P+R+H   K SK        K  P+D+
Sbjct: 1285 LGILKTE--RDTSTNRKQGQASKQPQRRHRKEKDSKVSESTAEFKSLPIDI 1333


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 IGALSVEDLKQSNKNSETAK 507
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 262 FDITVRADDNLPKAICHDCLQQV 330
           FDI V+   NL  A CH C++ V
Sbjct: 443 FDILVKPQLNLLAAPCHQCVELV 465


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 IGALSVEDLKQSNKNSETAK 507
           + A+SV+DLK+ NKN +  K
Sbjct: 81  VDAMSVDDLKKLNKNKKLVK 100


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +1

Query: 391 KQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQ 558
           K K    K +G  NK+T      S      S +   +     S ER+H D+  S Q
Sbjct: 292 KDKKPSHKSNGRPNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERRHYDSNHSSQ 347


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 313 DCLQQVST-LHLYAVKVEKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNK 489
           D ++++ T   L     EK    +E  K KSK  K+     K   L    +  + K    
Sbjct: 141 DVIEKLQTSTPLLQYLAEKKNAVVE--KGKSKPSKKSVKAKKKLRLAEKPASNNSKAGKS 198

Query: 490 NSETAKSSPSPERQHG----DTKISKQKPVQPVLKKSPL 594
           + E+ KSS +P         + K+S +K  +   KK+P+
Sbjct: 199 SQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKTPV 237


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 145 FGNLEKIIVRELSCRLCLCTDVVKLKPLSNEVKRKLK 255
           F ++  ++++ LS ++ LC  ++  +   NEVK  L+
Sbjct: 330 FYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFLQ 366


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
 Frame = +1

Query: 397 KSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSS-----PSPERQHGDTKISKQK 561
           +S G   DG ++  TPL  A   +  K S   ++T+K++      +P++    T  ++Q+
Sbjct: 512 QSAGVASDGESSPETPLTKASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQE 571

Query: 562 PVQPVLK-KSPLDMKLME-AMSLDEFAITEKVDKNLLGTSPKKQ 687
                 + K  L     E   S ++ A TE    N   ++P K+
Sbjct: 572 ANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANATASAPNKK 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,801
Number of Sequences: 5004
Number of extensions: 55201
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)