Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5e12
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 28 1.7
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.2
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 27 2.2
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 2.9
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 27 2.9
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 27 3.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 6.7
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.8
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 25 8.8
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 8.8
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
Frame = +3
Query: 552 ELAAEADLEKIYI-----LNKLSLHSLRLVF--KTILGVSDQEV 662
++AA+ DLE+IY+ ++L++H RL++ KT+LG +V
Sbjct: 34 KVAADMDLEEIYVTAVSGFHELAVHEPRLLYFEKTLLGEQSVQV 77
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 54 DYTYFCQPQKS*SLNMFIAVYLFIIIVCIVYFEKCLRRN 170
DY +F P S S+ + VYL I + +++ EKC + N
Sbjct: 76 DYLFF-SPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMN 113
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 321 KKVYAVTDPEDINTVANLSMEKSYIYGFSRPWLGDGLFTADVLTWRNNRRLLNQAFKHTI 500
+ + + + P D + + ++ +S + ++ +LG T ++W L+N +FK T+
Sbjct: 307 RSIISCSLPRDRSPITKTTVLRSGVPVYT--FLGPKCLTDGSVSWERLWVLINDSFKRTL 364
Query: 501 -LDGFVDVFNNQARSLV 548
+D ++D N +++
Sbjct: 365 DMDAYLDRLKNSLAAVI 381
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 511 LLTFSIIKPGVWWMNLQQKQTLKKFIY*ISFRCILYVW 624
++TF+ PG W N+ K ++F S+R + +W
Sbjct: 572 VITFTHYMPGWWSDNMHSKAVQQEFCSLYSYRIVNLLW 609
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 426 GLFTADVLTWRNNRRLLNQAFKHTILDGFVD 518
G+ T ++LT +N + +L++ F++ +LD D
Sbjct: 186 GIPTEEILTSQNTQAMLHKLFENNVLDNVKD 216
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 590 YINFFKVCFCCKFIHQTPGLIIEN 519
YI VCFCC FI T I N
Sbjct: 3 YIKCRYVCFCCAFISNTTSKSIFN 26
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -2
Query: 756 CRNAARTSETSCEDIMQDIICLQITVEFFQE 664
C S T C D+ +++ICL ++ E
Sbjct: 473 CYLQLTASRTQCSDLSREVICLMAELDHLNE 503
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 379 WKKVTSMASRGLGWVTVCSLQMF*HGETTEDF 474
W +M GL WV VC H ET DF
Sbjct: 265 WDFWINMIWAGLTWVIVCFTMPETHSETLLDF 296
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 618 VKNATKAYLIYKFFQGLLLLQVHPPDSW 535
+ +AT +YLI + + G LLQ+ DSW
Sbjct: 184 ITDATVSYLIQQVYAGAQLLQIF--DSW 209
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.8
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = +3
Query: 354 INTVANLSMEKSYIYGFSRPWLGDGLFTADVLTWRNNRRLLNQAFKHTILDGFV-DVFNN 530
+N V+N S YG +LG+ +A+ +RN L + T D + D+ +N
Sbjct: 31 VNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESN 90
Query: 531 QARSLVDELAAEADLEKIYILNKLSLHSLRLV---FKTILGVSDQEV 662
+ + E+ + Y+ + + +++L+ F I +++ E+
Sbjct: 91 FISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFTKIKAIAEAEL 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,457
Number of Sequences: 5004
Number of extensions: 73578
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -